Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4326 ATGGGTGGTGGTTCAGGAAGCTGGTTTAAATCACTCATTCCTCCTAGAAAGCTCTCCACAAATAATCAAGTTAAGGGAAGTGATAAGAGTAAGAGAAAATGGAAGTTATGGAGGAATTCTTCAGAAGTTATTGGATTTGGAAATTCTATGAAGAAGGGAAATGGTTTTGTTGGTTATGATAAATATTCTTGTTCTTCCTTTGTGGTGAATGAAGAAGCCTTTGCTGCTGCAATGGCTGCTGTGCTAAGAACTCCACATAAAGACTTCTTGGTGATCAAGCAGGAATGGTCTGCCATCCGTATCCAGTCTGCATTTCGAGGCTTCTTGGCAAGAAGGGCTTTGAGGGCCTTAAGGGCATTGGTGAGGCTGCAAGCTATATTTCGCGGCCGGTTAGTGAGAAAACAAGCCGCTGTTACTCTAAGGTGTATGCAGGCTCTCGTGCGAGTTCAAGAACGCGTGAAGGCGAAGAATGTTAAGAATTCTCCAGAAAAGAAAGCTAAGCAGAAGCTATTAAATGAGCGACGCAATCAAGCTGATCCTGCTAAACAAGCTGAGAAAGGGTGGTGTGACATACCAGGAACTGTGGAAGAAGTTAAAGCAAAACTAAAAATGAGGCAAGAAGGAGCAATTAAGAGAGATAGAACAATGTCATACTCCAATTCCACCCAGCAATCAACCCCGAGTTCTAGTTCAAACTCAAGAGCTTCTAAGCCATTGACTCCTCATAAGCACCGCAATTTTGACGGTAAGATCTTGTTAGAACGCTGGATTGCAGATACGCCATGGGAGAGTAGGTCGATGGGAGATATTGATTTGGACTCACCTTTGTCCAAGAAGAGTGAGAATGTTGAACTCTCTTTCAACACATATCAACAAAATGGCTTAGTAAAAGCAAGAAGGAATATTATTAATGGTGTGAAAACAAGGAGTTCAACTAAATCTCTTACAACCAGCCAATCAACTCCGTCGTCTTCGGCTATAAGTTCTGAATGCATGTATGATGATAGCCCTTTATCAACCTCATGCACATCTGATTCTCTAACCAAGGAGAGAGATACAAAGGAAAGAAAAATCGGGGAACCGAGCTACACGAATTTGACAGCGTCGTCCAAAGCTAAACTGAAGGCGTGTAGACATTCGTCTCCGAATTTGAAGAGACTCTTTATGGATGATGATTATCTGTCTCATAGCACACGGACAAACCTTCTAAGTGCAGATACTAGAAGCATTTCTGGTTCATATTCTTCAGCAAATATATGGAAAGATCTTTATGGAACACCTTCAAGGACAAGTTATCAAAAACAATTTACACGGGAAGATAAGTAG 1326 0.4155 MGGGSGSWFKSLIPPRKLSTNNQVKGSDKSKRKWKLWRNSSEVIGFGNSMKKGNGFVGYDKYSCSSFVVNEEAFAAAMAAVLRTPHKDFLVIKQEWSAIRIQSAFRGFLARRALRALRALVRLQAIFRGRLVRKQAAVTLRCMQALVRVQERVKAKNVKNSPEKKAKQKLLNERRNQADPAKQAEKGWCDIPGTVEEVKAKLKMRQEGAIKRDRTMSYSNSTQQSTPSSSSNSRASKPLTPHKHRNFDGKILLERWIADTPWESRSMGDIDLDSPLSKKSENVELSFNTYQQNGLVKARRNIINGVKTRSSTKSLTTSQSTPSSSAISSECMYDDSPLSTSCTSDSLTKERDTKERKIGEPSYTNLTASSKAKLKACRHSSPNLKRLFMDDDYLSHSTRTNLLSADTRSISGSYSSANIWKDLYGTPSRTSYQKQFTREDK* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4326 441 ProSiteProfiles IQ motif profile. 94 122 IPR000048 GO:0005515
Psa4g4326 441 Gene3D - 92 176 - -
Psa4g4326 441 SMART iq_5 116 137 IPR000048 GO:0005515
Psa4g4326 441 SMART iq_5 93 115 IPR000048 GO:0005515
Psa4g4326 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 136 IPR027417 -
Psa4g4326 441 MobiDBLite consensus disorder prediction 155 186 - -
Psa4g4326 441 MobiDBLite consensus disorder prediction 155 181 - -
Psa4g4326 441 Pfam IQ calmodulin-binding motif 118 135 IPR000048 GO:0005515
Psa4g4326 441 Pfam IQ calmodulin-binding motif 96 115 IPR000048 GO:0005515
Psa4g4326 441 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 3 439 - -
Psa4g4326 441 ProSiteProfiles IQ motif profile. 118 145 IPR000048 GO:0005515
Psa4g4326 441 MobiDBLite consensus disorder prediction 213 237 - -
Psa4g4326 441 MobiDBLite consensus disorder prediction 307 330 - -
Psa4g4326 441 PANTHER IQ-DOMAIN 5-RELATED 3 439 - -
Psa4g4326 441 MobiDBLite consensus disorder prediction 205 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4326 Psa-Chr4 381669967 381672845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4326 3 424 IQD Protein Family AT1G72670 42.166 2.22e-81 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4326 - - ahf:112710157 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4326 4 381669967 381672845 Psa4g4326 4 381669967 381672845 ECH
Psa5g6708 5 558429048 558431718 Psa4g4326 4 381669967 381672845 PCT