Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4306 ATGATGGCGTCAAAGCCAATCAAGATTTCTCACACGCGTACCAAGAGTTTATCAGAAGAATCTCACAAGACACATCAAAGTTGTGCAAATGATCATACAGAAAATGATGATACCGGAAAGATGAATAACCAAGAAGAAAATGAAAACAATGCAAAGAAAAATACATGTAATGATTCATCATCATCATCTTCACTATCTAGGACTCACAAAATAGAAACCCTAATGAGAAACTTGTCCGAGCTTTCCGCTTCTCCAAGACCAGATCCAAGAAGAATGATTTCAAAGAGTGCAACAAGTTCGCGTAGTGATAGTTTAGAAAGCACGAGTAGTTCACATAATAAGCCACATACAGGAGGTGATGTGAGATGGGATGCAATCAACGTGGTTTCAAAAGGGTCGAATTGTAATCTCAACTTTAGTCATTTTAGGCTTGTGAAACGCGTTGGTTATGGTGACATTGGAAGTGTTTACCTTGTTGAGCTTAAAGGAACAGGAACATTCTACGCTATGAAAGTTATGGATAAAGCTTCTCTTGCTAGCAGAAACAAGCTTCTTAGGGCACAGACTGAGAGGGAGATTCTTGGACTTCTTGATCATCCTTTCTTACCAACTTTGTATTCTTATTTTGAAAATGAAAAGTATTACAGTTTGGTTATGGAGTTTTGTAGCTGTGGTAGTTTGCATTCACTCAGATTGAAGCAACCCAACAAGCATTTCACCGAAGAGGCCGCAAGGTTTTATTGTTCAGAGATTCTATTAGCACTGGAGTATCTCCACATGTTAGGAATAGTATATAGAGATTTAAAACCAGAAAACGTTCTAGTCCGAGATGAAGGCCATATAATGCTATCAGATTTTGACTTATCTCTCCGTTGTTCGGTTAACCCTACACTCGTAAAATCCTCCTCCGCGCGTGTAACAACCACATCCATAGGAATCCTAGACGACGCACAAGTCGTGCAGAGTTGCATGCAGCCATCAAGTTTCTTCTTCCCACGGATCCTCCCCTACAAAAGAAACAGAAAATCAAAATCAGATTTCGGTCTCATAGGCGGCCGACTTCCAGAACTAATGGCAGAACCAACGAACGTCAGATCAATGTCGTTCGTTGGTACACACGAGTATCTCGCTCCGGAAATCGTCCGGGGCGAAGGGCACGGCAGTGCAGTCGATTGGTGGACGTTCGGGATATTTTTATACGAGCTTATATACGGGACAACGCCGTTTAAAGGTAACGGAAACCGTGCTACGCTTTTTAACGTTGTTGGACAGCCATTAAGGTTTCCTGAACATCCTTCAGCTAGTCCTGTTGCACGAGATCTTATTAGAGGGTTGTTGGTTAAGGAACCTCATAAAAGAATTGCTTATAAAAGAGGTGCAACTGAGATAAAACAACATCCATTTTTTGAAGGGGTGAATTGGGCTTTGATTCGAAGTTCTAGTCCTCCTATTATACCTGAAACTTTTGATTTTAGTCCGTATGTTAGTAAAGAAGCTGTTGTTGTGGCAGCTGATAAGAAGGATGTTGATAAAAATGATGATGGTAAGATGCAGAATGATCCTTCTTATGAAGATTTTGAGTATTTTTAG 1590 0.405 MMASKPIKISHTRTKSLSEESHKTHQSCANDHTENDDTGKMNNQEENENNAKKNTCNDSSSSSSLSRTHKIETLMRNLSELSASPRPDPRRMISKSATSSRSDSLESTSSSHNKPHTGGDVRWDAINVVSKGSNCNLNFSHFRLVKRVGYGDIGSVYLVELKGTGTFYAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFENEKYYSLVMEFCSCGSLHSLRLKQPNKHFTEEAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSARVTTTSIGILDDAQVVQSCMQPSSFFFPRILPYKRNRKSKSDFGLIGGRLPELMAEPTNVRSMSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELIYGTTPFKGNGNRATLFNVVGQPLRFPEHPSASPVARDLIRGLLVKEPHKRIAYKRGATEIKQHPFFEGVNWALIRSSSPPIIPETFDFSPYVSKEAVVVAADKKDVDKNDDGKMQNDPSYEDFEYF* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4306 529 Gene3D Phosphorylase Kinase; domain 1 140 225 - -
Psa4g4306 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Psa4g4306 529 Gene3D Transferase(Phosphotransferase) domain 1 363 487 - -
Psa4g4306 529 MobiDBLite consensus disorder prediction 48 80 - -
Psa4g4306 529 MobiDBLite consensus disorder prediction 12 47 - -
Psa4g4306 529 MobiDBLite consensus disorder prediction 507 521 - -
Psa4g4306 529 ProSiteProfiles Protein kinase domain profile. 142 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4306 529 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 18 529 - -
Psa4g4306 529 SUPERFAMILY Protein kinase-like (PK-like) 139 497 IPR011009 -
Psa4g4306 529 MobiDBLite consensus disorder prediction 1 118 - -
Psa4g4306 529 MobiDBLite consensus disorder prediction 507 529 - -
Psa4g4306 529 MobiDBLite consensus disorder prediction 93 116 - -
Psa4g4306 529 CDD STKc_phototropin_like 140 487 - -
Psa4g4306 529 SMART serkin_6 142 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4306 529 Pfam Protein kinase domain 143 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4306 529 Pfam Protein kinase domain 363 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4306 529 Gene3D Transferase(Phosphotransferase) domain 1 226 295 - -
Psa4g4306 529 PANTHER FLIPPASE KINASE 1-RELATED 18 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4306 Psa-Chr4 378839709 378841985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4306 105 529 AGC Kinase Gene Family AT1G79250 70.601 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Psa4g4306 Pkinase 4.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4306 - - gmx:100802478 670.233