Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4305 ATGGAAAATCGCATCTACGCTTCCTACAGCCCTACAAACTACACTGTATCCGGAGCCCCATCCACTTCCCCGACCCGATTTTACAACCCGGATACAATGTTCCTCGCTCACTATCGTCGCACCGCCGAAGCAGCCGCCGCTGCCGCCGCCATCGACATTGCTCCGCCTGGTGTTTCTTCAACTGCTAACTTCTTATGTCATACTAACCCTTGGGCGTCCGCTTTCACCGCCGCGAATGTTGCCTCTGCTTCACTTGGTCTTAAACGATCCTCTGACGCACTCTACCATCCGACCATTTTGAGTACAATTGGGCAAAACGAAGCTTGGTACACTACAAACTCACTGGCCAAGCGCCCTAGATACGAAACCGGAAGCACTTTGCCTATTTATCCTCACAGGCCAGGAGAGAGGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTCGGAGAGAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGATGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATAATGTTCCAAGTGAAACTCTTCCTGAGAGACCTGGAGAGCCAGATTGTCCATTCTTTCTCAAAACTCAAAAATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCAAATGTTCCATCTGAAAATGCTGATGTTTCTGGTTTACCCGAGAGGCCACTAGAGCCCCCTTGTGCGTTCTACTTGAAAACCGGAAAATGTAAATATGGTGTTGCATGCAAATTCCATCACCCCAAGGATATCCAGATTCAGTTCTATGATGAATTGAGCCGTACCGTTGAGCAGACACAAACAAATTCTTCTGTGTTTGACGGAGCAATAGGAGATGCACAACCAACTAAGTCTCTTATTTCTCCGCTGTTGCATAATAGCAAAGGGCTTCCTGTGAGACAGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCAGTTGTCGCTACAATCATCCCGACATGAATGCAATTAATCCAGCTATGTCTGCATTGGCCCCATCTGTTTTGGCATCCTCAGCTGCTGCTAATCTTAACATTGGAGTTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGATCCAAGGCTTTCAAATCCAATGGCTCAGGTGGGAATGACAGAGAATATCTATCCTCAGCGCCCTGGAATGATTGAATGTGATTTCTTTATGAAAACCGGCATATGTAAATTTGGGGAAAGATGCAAGTACCATCATCCAGTTGACCGTTCAACATCGTCGCTGTCAAAACTGCAATCAAATGTTAAACTCACTCCTGCAGGGTTACCAAGAAGAGAGGATGTTGAGCTCTGCCCATATTATTTGAAAACTGGCACATGCAAGTTTGGTGCAACATGCAAGTTTGACCATCCACCACCAGGAGAAGTGATGGAGAAAGCCAAGTCACAAGGAACTTCTACAACCAATGGAGAAGAAGAAGAGACCAACGTAAACGTGGCTGGTTCTGCCCCGGAACAATGTTTAGATCATGTCTGA 1527 0.4571 MENRIYASYSPTNYTVSGAPSTSPTRFYNPDTMFLAHYRRTAEAAAAAAAIDIAPPGVSSTANFLCHTNPWASAFTAANVASASLGLKRSSDALYHPTILSTIGQNEAWYTTNSLAKRPRYETGSTLPIYPHRPGERDCAHYMLTRTCKFGESCKFDHPIWVPDGGIPDWKEVPNNVPSETLPERPGEPDCPFFLKTQKCKFGSKCKFNHPNVPSENADVSGLPERPLEPPCAFYLKTGKCKYGVACKFHHPKDIQIQFYDELSRTVEQTQTNSSVFDGAIGDAQPTKSLISPLLHNSKGLPVRQGEVDCPFYMKTGSCKFGASCRYNHPDMNAINPAMSALAPSVLASSAAANLNIGVINPAASFYQAFDPRLSNPMAQVGMTENIYPQRPGMIECDFFMKTGICKFGERCKYHHPVDRSTSSLSKLQSNVKLTPAGLPRREDVELCPYYLKTGTCKFGATCKFDHPPPGEVMEKAKSQGTSTTNGEEEETNVNVAGSAPEQCLDHV* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4305 508 SUPERFAMILY CCCH zinc finger 190 211 IPR036855 GO:0046872
Psa4g4305 508 ProSiteProfiles Zinc finger C3H1-type profile. 442 470 IPR000571 GO:0046872
Psa4g4305 508 SUPERFAMILY CCCH zinc finger 308 331 IPR036855 GO:0046872
Psa4g4305 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 159 IPR000571 GO:0046872
Psa4g4305 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 444 469 IPR000571 GO:0046872
Psa4g4305 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 211 IPR000571 GO:0046872
Psa4g4305 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 330 IPR000571 GO:0046872
Psa4g4305 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 253 IPR000571 GO:0046872
Psa4g4305 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 393 417 IPR000571 GO:0046872
Psa4g4305 508 PANTHER CCCH ZINC FINGER/TIS11-RELATED 63 484 IPR045877 GO:0003729
Psa4g4305 508 Gene3D - 391 485 - -
Psa4g4305 508 Gene3D - 133 223 - -
Psa4g4305 508 Gene3D - 224 340 - -
Psa4g4305 508 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Psa4g4305 508 ProSiteProfiles Zinc finger C3H1-type profile. 391 419 IPR000571 GO:0046872
Psa4g4305 508 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Psa4g4305 508 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Psa4g4305 508 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 63 484 - -
Psa4g4305 508 SUPERFAMILY CCCH zinc finger 444 469 IPR036855 GO:0046872
Psa4g4305 508 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Psa4g4305 508 MobiDBLite consensus disorder prediction 477 499 - -
Psa4g4305 508 SUPERFAMILY CCCH zinc finger 231 254 IPR036855 GO:0046872
Psa4g4305 508 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Psa4g4305 508 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Psa4g4305 508 SMART c3hfinal6 133 160 IPR000571 GO:0046872
Psa4g4305 508 SMART c3hfinal6 442 469 IPR000571 GO:0046872
Psa4g4305 508 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Psa4g4305 508 SMART c3hfinal6 391 418 IPR000571 GO:0046872
Psa4g4305 508 MobiDBLite consensus disorder prediction 475 508 - -
Psa4g4305 508 SUPERFAMILY CCCH zinc finger 394 419 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4305 Psa-Chr4 378789461 378796592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4305 302 470 C2H2 Transcription Factor Family AT3G02830 34.320 2.81e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g4305 zf-CCCH 1.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4305 - - cam:101499264 838.565