Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4300 ATGACGATACCACTTTCAATGGTTGATGATGTTGCTATCTTTGATTTATGTCAACAACATCACGGCCACAACATGTTACCTGTCTATGTTCTCTTTGATTCTCGTACCATGTCTCACAACCACCCAACAAGAACACCACACTGGTCTGTCATAGATCAAGCTCGTATCGCCAGCAACCTCAACAATGTTTCATCAACCGTGTCTGTGGTAGATGAAACTGTTATCTATGATTCTCCTATGGGCAATGTTCCAAGAAGATCAAGGATTAATCATCAAACGGGTCATCCCCGCCACCACCACAACAATGGTACTAGAGCTTCTCCACCTGTGATCCGTGTTCAAAATACTAGACCTTCTCCTGTGGTGATCCCTGTTCAAGATACTTCGCAACATCTCACAACATCCACAACAGATGCAGAATCCATCTGTTGCATTTGTCTTGTTGACTTGTCTAATGGTTCTTCCACGCCAATTCGGTTGCGCTGCTCTCATCTATTTCATAGCCACTGCATTCAAAAATGGAATAGCATTAAGAAAACTTGTCCACTCTGTCGCGCCAATGTTTAA 567 0.4303 MTIPLSMVDDVAIFDLCQQHHGHNMLPVYVLFDSRTMSHNHPTRTPHWSVIDQARIASNLNNVSSTVSVVDETVIYDSPMGNVPRRSRINHQTGHPRHHHNNGTRASPPVIRVQNTRPSPVVIPVQDTSQHLTTSTTDAESICCICLVDLSNGSSTPIRLRCSHLFHSHCIQKWNSIKKTCPLCRANV* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4300 188 SMART ring_2 143 184 IPR001841 -
Psa4g4300 188 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 94 187 IPR044675 -
Psa4g4300 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 188 IPR013083 -
Psa4g4300 188 MobiDBLite consensus disorder prediction 92 111 - -
Psa4g4300 188 SUPERFAMILY RING/U-box 137 188 - -
Psa4g4300 188 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Psa4g4300 188 Pfam Ring finger domain 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4300 Psa-Chr4 378253097 378255122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4300 131 188 C3H Transcription Factor Family AT1G74620 43.103 7.60e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4300 - K15712 cam:101492064 75.8701