Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4295 ATGGAACCTCGAATTGGGAATAAGTTCCGTCTTGGTCGGAAAATTGGTAGCGGATCTTTCGGAGAGATCTATCTAGGAACCAATATTCAGACGAATGAAGAGGTTGCGGTTAAGCTTGAAAATGCCAAAACCAAGCACCCACAATTGTTGTATGAATCAAAGCTGTATAAATTACTGCAAGGAGGAACTGGAATACCAAACGCGAAATGGTCCGGTGTCGAAGGAGAGTACAATGTCCTTGTGATGGATTTACTTGGTCCTAGTCTTGAGGATTTATTCAATTTTTGTAATAGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAAATGATAAATCGAGTCGAATATGTTCATATGAAGTCATTTTTACACCGGGACATCAAGCCAGACAATTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTACGTCATTGACTTTGGTCTTGCTAAGAAATTCAGAGACAGTAATAATCAGCATATTCCCTACAGAGAGAATAAGAATTTGACGGGAACTGCTAGGTATGCCAGTATGAATACTCATCTTGGAATTGAACAAAGCCGCAGAGATGATTTAGAGTCACTTGGATATGTTCTTATGTATTTTTTAAGAGGAAGTCTGCCTTGGCAGGGGTTGAAAGCCGGTACTAAGAAGCAGAAGTATGAGAGAATCAGTGAGAAGAAAGTTTCTACTTCGATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCATCATACTTCCATTATTGTCGGTCACTGAGGTTTGATGATAAACCAGATTATGCTTATCTGAAAAGACTTTTGCGTGATCTATTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTCGATTGGACCATTTTGAAATATCAGCAATCTCAAATTTCCACTCCTCCTTCCCGTGGTATTGGTCTCGCCGCCGGACCAAGTTCTGGTCTGCCACTAGCTTCTGCAAATAACGATGGACAGTCAGGTGGAAAAGATGGTAGACATATTGGATGGTCTTCAACTGATCCCACTCGTAGGAGAAACTCTGGACCCATTGCCATTGATGGAATCGTATCTAGAGAGAAAGCCCCGGTTACAAATGATTTAACTGGATCTAAAGATGCTATGTTGCCAAGTTCGAATTTCTTTCGGTCAAGTGGATCTGCAAGGCAAAATGCCATCTTAAACAGCAGCCGTGATGCAGTTGTTGACAGTGAGACCGAGCCCTCCTCCCGTCCTCTCACGCAGGACCCAAGTCAAGGAGCAACCCGTAAAAGCTCTGGTGCTCAAAGAAGTTCACATATCATGTCATCTGAGCACAACCGAGTATCATCTGGAAGAAACACATCATCAAACATAAAGAATTTGGATTCAACTCTCAGAGGTATCGAGAGTCTGCATTTAAACGATGAGAGGGCACAGTATTAG 1428 0.423 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAVKLENAKTKHPQLLYESKLYKLLQGGTGIPNAKWSGVEGEYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEYVHMKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKFRDSNNQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQISTPPSRGIGLAAGPSSGLPLASANNDGQSGGKDGRHIGWSSTDPTRRRNSGPIAIDGIVSREKAPVTNDLTGSKDAMLPSSNFFRSSGSARQNAILNSSRDAVVDSETEPSSRPLTQDPSQGATRKSSGAQRSSHIMSSEHNRVSSGRNTSSNIKNLDSTLRGIESLHLNDERAQY* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4295 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa4g4295 475 CDD STKc_CK1_delta_epsilon 8 281 - -
Psa4g4295 475 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4295 475 SMART serkin_6 9 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4295 475 MobiDBLite consensus disorder prediction 396 456 - -
Psa4g4295 475 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4295 475 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Psa4g4295 475 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Psa4g4295 475 PANTHER CASEIN KINASE-RELATED 1 458 - -
Psa4g4295 475 SUPERFAMILY Protein kinase-like (PK-like) 5 289 IPR011009 -
Psa4g4295 475 MobiDBLite consensus disorder prediction 324 359 - -
Psa4g4295 475 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 458 IPR030509 GO:0004672|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4295 Psa-Chr4 377946112 377952016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4295 7 222 EF-hand Containing Proteins AT2G17890 26.339 3.15e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Psa4g4295 Pkinase 2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4295 K02218 - gmx:100787808 786.178