Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4292 ATGTCTACCTCTCACAAAAAGTACGATGTATTCATTAGCTTTAGGGGAGAGGACACACGGACAAACTTCACTGCCCAGCTTCATCAAGCTCTTACCTATAGAAACATCGAAGCGTACATTGATTATAATCTTATAAAGGGACATGAGGTTGGACCTGCTCTTGCCAAAGCAATCCAGGACTCACATCTGTCTATTGTAGTTTTCTCACAAAACTATGCAACCTCAAAGTGGTGCTTGGATGAACTCCTCCATATACTCCACTGCAGAGAACTTCATGGACAGGTAGTTATACCTGTGTTCTGTGATGTAGATCCATCACATGTACGTCATCAGAAAGAGAGTTATCAGATAGCCTTCGCAAAATACCAGAGAGAATTCGCCAAAAACAGGAAATCCCATCTAGACAAAGTGTCTGAATGGAGAGCTGCTCTCACTTTAGCCGCGGATATATCTGGATGGGACTCTCGTAAATACAGGGATTATTCTCAAGTCATAGACAATGTTGTGGAAGATGTTTTGCAGAAGCTGTCTCTCATGTATCCTAATGAACTGAAAAACCTTGTTAAAGTTGATGAACACAATGAACGTATTGAATTATTACTGAAAACAATACCAAGAATCGGAATTTGGGGCATGAGTGGAATAGGAAAGACAACCATAGCCATACAGATGTTTGCCAAGAACTTTGCCCATTATGATAATGTATGTTTCTTGGAAAAGGGGAGTGATGCAGTGGAAGGAATAATTTTTGATTTGTCTCAAAAACTAGATTTAAATGTTCAAGCTGACACATTCAACTTGATGACTAAATTAAGATTTCTTAAATTCCACGTTCCCTCGGGTAAGAAGAAATTGGGCACGGTGCATCTTCCTAAAAATATTATGCCGTTTTTTGACAAATTGACATACCTTGAGTGGAACGGGTATCCCTTGAAGTCTCTCCCACAACCTTTTCGTGCTGACCAGTTGATTCAGATTTGTTTGCCAAACAGCAACATTGAACATCTTTGGTTCGGGATGCAGGAACTTGTGAATTTAGAGGCAGTCGACCTAAGTGAGTGCAAAGAGTTGATCGACCTTCCTGATTTGTCGAGGGCATTAAAATTAAAACAGTTGCGCCTTTCTGGCTGTGAAAATTTAAGTGAAGTTCAGGCTTCTTCTTTTTCTAAGGACACACTTGATACTTTGCTACTGGATAGGTGCACAAAATTGCAAAGTCTTATGGGTGAGAGGCATTTAACATCTCTAGCAAATTTCAGTGTCAAAGGCTGCTTAAGTCTGAAGGAGTTTTCGTTGTCTTCAGATTCAATAAGAAGGTTGGATTTAAGCAATACAGGAATCGAAATATTGCACCCATCAATCGGTGGTATGAACAAGCTTTATTCGTTGAATCTAGAAGGTTTAAATCTAACAAATCTACCGATTGAATTGTCTCGCTTGAGATCACTTACTGAACTTCGGGTTTCTAAGTGTAGTGTAGTAACTAAATCAAAGTTAAAAGCCCTTTTTGATGGTCTGGGCTCATTAACATTATTACACTTGAAAGACTGTTGTAACTTGTTTGAACTCCCTGCAAACATTAGTTCCTTGTCATCATTGCATGAATTGAAACTAGATGGAAGCAGTGTGGAGGGGTTGCCTGCTAGCATCATGTACCTCTCAGAGCTAGAAGTACAGTCTTTAGACAATTGCAGTAAGCTTCGATGTCTGCCAGAACTTCCTTCAAGCATCAAAGAGTTTCAAGCCGACAACTGCACCTCGTTAATGACAGTATCCACTTTGAAGACTTTTTCAATAAACATGATTGGACAGAAAAAATACATTTCATTTCAGAATAGTATTAAGATGGAATTTGATGGACCCTCCCTTGCCCGCATTACGGAAGATGCCATGTTTACAATGAAAAGTGCTGCCTTTCACAATGTATTAGTGAGAGTGTACCGATACCAAACCCACAGCTACAATTATAACAGCGCCGGGGTTTGTCTGCCAGGACACAGAGTTCCAAGTCAGTTCAAACACCGATCAACCAAATATTCCTCCGTAACTATCAACATTTCCAACTCGGTGGGCTTCATTTTCTCAGTTGTTGTTACTCCATCTAAGATAACACAACATGAATACTTTGTTGGAATCCTATGTCAATGCTATTCGGAAGATGGAAGGAGGGAGGTGGGATATAAGTCTAGCTGGAATCATAAACCGGTTTCAAATTTGAACATGGATCACGTTTTTGTATGGTATGATCCATACCATTCTGACAGCATACTTGGAAGGGATGAACAAAAGCTTTCTTTTAAATTCCACATCACAACTTATACAAGTAGCGGCAGAGAACTTGGCGGCCTTGTAAGTATCAAAGAGTGTGGCGTTTGTCCAATCTACTACTCAGAAAGTAAGAGGGTTTTAGGCACAGGGAATTTAGACAAGGGCTTAGAATTAGAGTTGTATCAGGAAATTGAATTTGAGAGATTAGGTGAAGGCTATGATGAGGGAGAAGGCATTGACATTGAATCAAATGAAATAGGTGATGACAAGGAAGGCATTTACATACAGAACCAAAAGTTGGACTTGAATGAAAATTGTTACCGTCCATATGACTGTTTAATTGTCTCTAAAGATGTTCAGGCACATGACAATCCTCAAGAAAAAGAAAATTTGAAAGATGATGATAATTCCAAAGAAACGATGAAATCTGAGATTCTTCATAACAGTACTTCTTTGAAGTCTGGAGAGGAAACTGAAACTTCTTCCAACAAACGAAAACAATTTGAGAAGGAGGAAGATTCTACAGGAGGAAGTTCTGATGTAGAATTGTCTATCAATAAAGTAATTAAGGTAATACCAGTTAAAGATGCTCCCAACAAATTAAATCCAAACTCCTCAATGGCTGCTGAGAGTTCTTCAAGTAAGCCTTCTTCTTCAGAGGGGCCATTAAGAAGAATTGAAGAGGACTCTTCAAAATTAAAGAAATGCAGTACTTTGGAATGTTCTCCTGTCGATTATTCTGAATATAAGAGAATCCTTGAAGAAGACCCTCTGGAAATCTTGGAGAAACTCTTATCGGATGAACTTGGTCGTTCTTCACAGGCTTCTCACTCTTCAACACAAGCAGAAGCTACTGAAATTAGGAAAGAGTCAATCGAGACACTGCTTGATGAATTAAGGCAATTGGCTTTTTCGAGGAACTTGCTGAAAAATCTACCCAATGATGTGACCCTTGAAGAAGAGGTGAAAGCTTTACTACTTAAACTCAATTTTAGAGCTAATGAGCTTTCTGAGAAACAAAGTTCTGGTATTGCTGATTTCACCACAATCTTCAATGAAGCCACAGTCAATATTGATGAAGGAAAACGGAGCAATGTTACTCTTCAACAACTTAATGTGGACCATAAAGATTCAATATCAAAGCTTCAAGCATCTAAAATCAAGATAAGGAAGTTCGAAGAGTCCATCATTGCCGGTGAGGATAAGATTAAGGCCATGGACATTGAAATTGAAGATATTAAAGCGCAGATCTTTTTGCTCGAGGAAAAAGCGCGTAAGGTTCAACAGGAGAAGTCACAGTTAGAGGATGCCTGCTGGAAATGTAAAGAGAAGAGAAGTGAAATTTTGGAAGAAGCTAAATATGTAGCATCTAAGACCATACAAACCCGCGAGAAGATTGATAATGTCAAAAAGAAGAAGCTGGAGTTGGATTCTAACTGTGATGTGCTTGAAGGACATTATGCCATAATGAGACTATCACCTCCTTTTTAG 3759 0.3897 MSTSHKKYDVFISFRGEDTRTNFTAQLHQALTYRNIEAYIDYNLIKGHEVGPALAKAIQDSHLSIVVFSQNYATSKWCLDELLHILHCRELHGQVVIPVFCDVDPSHVRHQKESYQIAFAKYQREFAKNRKSHLDKVSEWRAALTLAADISGWDSRKYRDYSQVIDNVVEDVLQKLSLMYPNELKNLVKVDEHNERIELLLKTIPRIGIWGMSGIGKTTIAIQMFAKNFAHYDNVCFLEKGSDAVEGIIFDLSQKLDLNVQADTFNLMTKLRFLKFHVPSGKKKLGTVHLPKNIMPFFDKLTYLEWNGYPLKSLPQPFRADQLIQICLPNSNIEHLWFGMQELVNLEAVDLSECKELIDLPDLSRALKLKQLRLSGCENLSEVQASSFSKDTLDTLLLDRCTKLQSLMGERHLTSLANFSVKGCLSLKEFSLSSDSIRRLDLSNTGIEILHPSIGGMNKLYSLNLEGLNLTNLPIELSRLRSLTELRVSKCSVVTKSKLKALFDGLGSLTLLHLKDCCNLFELPANISSLSSLHELKLDGSSVEGLPASIMYLSELEVQSLDNCSKLRCLPELPSSIKEFQADNCTSLMTVSTLKTFSINMIGQKKYISFQNSIKMEFDGPSLARITEDAMFTMKSAAFHNVLVRVYRYQTHSYNYNSAGVCLPGHRVPSQFKHRSTKYSSVTINISNSVGFIFSVVVTPSKITQHEYFVGILCQCYSEDGRREVGYKSSWNHKPVSNLNMDHVFVWYDPYHSDSILGRDEQKLSFKFHITTYTSSGRELGGLVSIKECGVCPIYYSESKRVLGTGNLDKGLELELYQEIEFERLGEGYDEGEGIDIESNEIGDDKEGIYIQNQKLDLNENCYRPYDCLIVSKDVQAHDNPQEKENLKDDDNSKETMKSEILHNSTSLKSGEETETSSNKRKQFEKEEDSTGGSSDVELSINKVIKVIPVKDAPNKLNPNSSMAAESSSSKPSSSEGPLRRIEEDSSKLKKCSTLECSPVDYSEYKRILEEDPLEILEKLLSDELGRSSQASHSSTQAEATEIRKESIETLLDELRQLAFSRNLLKNLPNDVTLEEEVKALLLKLNFRANELSEKQSSGIADFTTIFNEATVNIDEGKRSNVTLQQLNVDHKDSISKLQASKIKIRKFEESIIAGEDKIKAMDIEIEDIKAQIFLLEEKARKVQQEKSQLEDACWKCKEKRSEILEEAKYVASKTIQTREKIDNVKKKKLELDSNCDVLEGHYAIMRLSPPF* 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4292 1252 Gene3D Ribonuclease Inhibitor 296 433 IPR032675 -
Psa4g4292 1252 Pfam TIR domain 7 186 IPR000157 GO:0007165
Psa4g4292 1252 ProSiteProfiles TIR domain profile. 6 176 IPR000157 GO:0007165
Psa4g4292 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 262 IPR027417 -
Psa4g4292 1252 Gene3D Ribonuclease Inhibitor 434 615 IPR032675 -
Psa4g4292 1252 PRINTS Disease resistance protein signature 206 221 - -
Psa4g4292 1252 PRINTS Disease resistance protein signature 551 567 - -
Psa4g4292 1252 SUPERFAMILY L domain-like 250 594 - -
Psa4g4292 1252 Coils Coil 1038 1058 - -
Psa4g4292 1252 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 153 IPR035897 -
Psa4g4292 1252 MobiDBLite consensus disorder prediction 899 913 - -
Psa4g4292 1252 MobiDBLite consensus disorder prediction 955 976 - -
Psa4g4292 1252 PANTHER NB-ARC DOMAIN PROTEIN 6 244 - -
Psa4g4292 1252 PANTHER NB-ARC DOMAIN PROTEIN 244 1158 - -
Psa4g4292 1252 SMART till_3 7 150 IPR000157 GO:0007165
Psa4g4292 1252 Coils Coil 1159 1193 - -
Psa4g4292 1252 Gene3D - 173 285 IPR027417 -
Psa4g4292 1252 Gene3D - 4 172 IPR035897 -
Psa4g4292 1252 MobiDBLite consensus disorder prediction 877 937 - -
Psa4g4292 1252 MobiDBLite consensus disorder prediction 914 933 - -
Psa4g4292 1252 MobiDBLite consensus disorder prediction 955 985 - -
Psa4g4292 1252 MobiDBLite consensus disorder prediction 877 898 - -
Psa4g4292 1252 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 244 IPR044974 GO:0006952
Psa4g4292 1252 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 244 1158 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4292 Psa-Chr4 377865145 377870652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4292 239 536 WRKY Transcription Factor Family AT4G12020 31.494 2.01e-26 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4292 - - cam:101489032 1459.89