Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4284 ATGGAATTCCTTGTAAGAGTTGCGGAACTAATATCTCTATTAGAAAGTCGAATTACCAACTTTTACACAAATTTTCAACTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCATGCTGGGGAATTGGTTGAATTTTCCAGCGGTATGAAAGGAACAACGTTGAATCTTGAGAATGAGAATGTTGGAATTGTTGTCTTTGGGCGTGTGGTCGACGCCTTGGGAGTACCCACTGATGGAAGAGGGGCTCTAAGCGATCACGAGAAAAGATGTGTAAAAGTTAAAGCCCCTGGGATTATAGAACGTAAATCAGTGCACGAGCCTATTCAAACTGGGTTAAAAGAGGTAGATAGCCTGGTTCCTATAGGTCGTGGTCAACGAGAACTTATAATCGGGGGCCGACAAACTGGAAAAACAGCTATAGCTATTGGTACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCATCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCAATTGGACAGAAACGCTCAATTGTGGCACAATTAATTCAAACTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCACTTCGAATCCTGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCACGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGTGAAGGCATATCGACAAATGTCATTATTGTTACGCCGGCCACCAGGACGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTGTCTTAGAAAGAGCCGCAAAACGGTCGGACCAGACAGGCGCAAGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGACCTATATTCCCACCAATGTTATCTCCATAATGGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCAGAATTAGACCTGCTATTAATGTCGGCGTATCTGTCAGTCATGTCGGGTCTGCCGCTCAGTTGAAAGATATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAATGGCCGCCTTTGCTCAATTTCACTCAGACCTTGATGTTGTGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGTACCACTTCCTATTGAAAAACAAATTCTAGTAATTTATGTAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAAAATAGCTCAATATGAAAGAGACATTCTAAGCACTATAAAACAAGAATTACTACAATCATTAAAAGGTGGACTAACTGGCGAGAGAAAGATAGAAATGCCAGCGTTACTGCGCTTATTCTATCTGTTCCTGATAGTGGTCACTGGTTTGATTCTTTCCCATTTTATATTTATCCTTTTTGGAGAAATATATCTCTTTCCTTCCTTGCTTTATAAGGCATTCATCGTCGCGGGTGCCCGCGCCCTTTTTTCTTTTTTAGTAAAAAAGGGGTTACCTGGAGGGCTCGCCTTGGCCCTTGGATTCATAATAAGAATACTTTTTTCCGAAACGGATAATGAAATTCTTCATATGATGCCCTCGGGTGAGGGTGAGGGAGGACGAAGATTCAGGTGGATTGACTTGTTTGGAAGCTTTGAAAGTAGTAATTCCAAAGCCAGTGTCAACCAACCGGCCCCCGACTATGCCAACCCTGGTGAAGCCGACACGCCTATTTATCACTCGTTACAGGAGGACGGACAGAGGCGCCAACAACTCTCTAATCGTCTTGGTATTAACTGTATAGGAAGTTTTATGCCCGACGAAGTTCGGGAGTCCGTTATAGAAATTCAAATTTCGATAGAACTTAAGATCGACAAATCCCTTCACTTAGACAGGTTTTCCGAAGATTCCCTTACGGAGAAAAGGCATTAG 1992 0.4267 MEFLVRVAELISLLESRITNFYTNFQLDEIGRVVSVGDGIARVYGLNEIHAGELVEFSSGMKGTTLNLENENVGIVVFGRVVDALGVPTDGRGALSDHEKRCVKVKAPGIIERKSVHEPIQTGLKEVDSLVPIGRGQRELIIGGRQTGKTAIAIGTILNQKQMNSRAISESETLYCVYVAIGQKRSIVAQLIQTLSEANALEYSILVAATTSNPAPLQFLAPYSGCAMGEYFHDNGMHALIIYDDLSKQVKAYRQMSLLLRRPPGREAFPGDVFYLHSRVLERAAKRSDQTGASSLTALPVIETQAGDVSTYIPTNVISIMDGQICLETELFYRRIRPAINVGVSVSHVGSAAQLKDMKQVCGSLKLELAQYREMAAFAQFHSDLDVVTQALLNRGARLTEVLKQPQYVPLPIEKQILVIYVAVNGFCDRMPLDKIAQYERDILSTIKQELLQSLKGGLTGERKIEMPALLRLFYLFLIVVTGLILSHFIFILFGEIYLFPSLLYKAFIVAGARALFSFLVKKGLPGGLALALGFIIRILFSETDNEILHMMPSGEGEGGRRFRWIDLFGSFESSNSKASVNQPAPDYANPGEADTPIYHSLQEDGQRRQQLSNRLGINCIGSFMPDEVRESVIEIQISIELKIDKSLHLDRFSEDSLTEKRH* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4284 663 Gene3D - 355 475 IPR038376 -
Psa4g4284 663 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 123 347 IPR000194 GO:0005524
Psa4g4284 663 TIGRFAM atpA: ATP synthase F1, alpha subunit 78 453 IPR005294 GO:0015986|GO:0045261|GO:0046933
Psa4g4284 663 Coils Coil 355 375 - -
Psa4g4284 663 Gene3D - 71 354 IPR027417 -
Psa4g4284 663 Pfam ATP synthase alpha/beta chain, C terminal domain 354 451 IPR000793 GO:0015986
Psa4g4284 663 Hamap ATP synthase subunit alpha [atpA]. 3 485 IPR005294 GO:0015986|GO:0045261|GO:0046933
Psa4g4284 663 ProSitePatterns ATP synthase alpha and beta subunits signature. 338 347 IPR020003 GO:0005524
Psa4g4284 663 CDD ATP-synt_F1_alpha_C 358 456 IPR000793 GO:0015986
Psa4g4284 663 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 12 81 IPR036121 GO:0046034|GO:1902600
Psa4g4284 663 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 79 IPR004100 GO:0046034|GO:1902600
Psa4g4284 663 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 6 459 - -
Psa4g4284 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 353 IPR027417 -
Psa4g4284 663 CDD ATP-synt_F1_alpha_N 29 79 - -
Psa4g4284 663 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 6 459 - -
Psa4g4284 663 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 356 453 - -
Psa4g4284 663 CDD F1_ATPase_alpha 72 350 IPR033732 GO:0032559
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4284 Psa-Chr4 377115905 377117979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4284 34 378 Primary Pumps ATPases(2) AT4G38510 24.390 2.42e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4284 K02132 - gmx:15308608 790.415