Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4268 ATGGGGAATCAAAAGCTGAAATGGACGCAGGAAGAAGAAGACGCGCTTATTGCTGGAATTGACAAGCACGGCACTGGAAAATGGAAAACCATTCTCGTTGATCCTCAATTTGCTCATTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATATGAATGTTTATGTGAATAATGGTTCACAAGGTTCTAGTTCTAGGACTCCCAAGCCTAAAGCTGCTCCTGCTTCTTCCACTGCCGTTCCTCAAATTTCTGCTCCTTCTTCTGATATCGTTGCCTCTGATCCTTCTCCAATTGAACAAGAGGTTAAAAATCCTCCAAGGTATAATGCCATGGTTTTTGATGCTCTATCTACATTGAAGGACACTAATGGATCCGACCTAAATGCTATTGCTAGTTTCATTGAGCAAAAGCACCAGCAGGTTCCTCAAAATTTCAGAAGGGCACTGAGTTCAAGGCTGAGGACCCTTGTGAATCAAGGGAAGCTTGAAAAGGTACAAAATTGTTACAAGATAAAGAAAGATGCCCCATTAATGACAAAAACACCTTCACCTTCACCAAAACAAAAGGATGCAAGGCCGCAACAGCAATCATCGGTCTACGATGATATGCTGAAGAAAGCAGCTGATACTGCAGCAAACATGATTGCAGAGGCTGAAAACAAATCATATCTGGCAAGTGAGGCAGTCATGGAGACAGAAAGATTCGCCCGATTGGTTGAAGAAAATGATGCAGTGTTGTTGCTAGCAGAAAAACTTTATGAACAATGTTTACGCGGTGAAACTTTCAAGTGGGCTTAA 810 0.421 MGNQKLKWTQEEEDALIAGIDKHGTGKWKTILVDPQFAHLLTSRSNIDLKDKWRNMNVYVNNGSQGSSSRTPKPKAAPASSTAVPQISAPSSDIVASDPSPIEQEVKNPPRYNAMVFDALSTLKDTNGSDLNAIASFIEQKHQQVPQNFRRALSSRLRTLVNQGKLEKVQNCYKIKKDAPLMTKTPSPSPKQKDARPQQQSSVYDDMLKKAADTAANMIAEAENKSYLASEAVMETERFARLVEENDAVLLLAEKLYEQCLRGETFKWA* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4268 269 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 267 - -
Psa4g4268 269 Pfam linker histone H1 and H5 family 110 170 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g4268 269 SUPERFAMILY "Winged helix" DNA-binding domain 108 185 IPR036390 -
Psa4g4268 269 MobiDBLite consensus disorder prediction 61 98 - -
Psa4g4268 269 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Psa4g4268 269 PANTHER SINGLE MYB HISTONE 4 1 267 IPR044597 GO:0003691
Psa4g4268 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 64 IPR017930 -
Psa4g4268 269 MobiDBLite consensus disorder prediction 177 202 - -
Psa4g4268 269 Gene3D - 104 194 IPR036388 -
Psa4g4268 269 SMART sant 4 59 IPR001005 -
Psa4g4268 269 MobiDBLite consensus disorder prediction 185 202 - -
Psa4g4268 269 CDD SANT_TRF 7 57 - -
Psa4g4268 269 Gene3D - 2 59 - -
Psa4g4268 269 MobiDBLite consensus disorder prediction 61 109 - -
Psa4g4268 269 CDD H15 110 169 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g4268 269 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Psa4g4268 269 SUPERFAMILY Homeodomain-like 3 58 IPR009057 -
Psa4g4268 269 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 108 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa4g4268 269 SMART h15plus2 106 172 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4268 Psa-Chr4 376490233 376497937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4268 1 269 Single Myb Histone (SMH) Gene Family AT1G72740 45.775 4.68e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa4g4268 Linker_histone 9.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4268 K09422 - gmx:778177 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4268 4 376490233 376497937 Psa4g4268 4 376490233 376497937 ECH