Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4254 ATGCAAAGGATTAAGCCAGAATGCCAAACCATCGTCAGAACCACCGTCATTCCGATTAATGCCAGCCGGAATAGCCAAGTCGCCGTCAAATGGGCCGTTGATAATCTTCTAAAGAAGAACTCCAATTGTATCCTTATTCATGTTCGTACCAAACCCATCACCAATTCCGATGATAATGTCGACCACAATGCTCCTAAACACGGCCGTCCACCAACTCAAGAAGAATTGCATCAATTCTTTCTTCCCTTTAGAGGATTTTGTGCTAGAAAAGGGATTTTGGCAAAGGAATTGGTCTTACACGACATCGATGTTCCAAGCGCGCTTACCGATTATGCTGTTGAAAACCCCGTCAACAATGTTGTTGTTGGTGCTAGTTCTTCCCCATGGAGTGCTTTCATGAGAAGATTTAAAGAAGCAGATGTTGCATCAATCTTAGCCAAGACATTGCCAGAATCATCGACATTGTATGTTATATCGAAAGGAAAAGTACAAAAGATTCAACCATCCGGGCCTCGGATTCCTCGTGATGATCAATCTAAGAATATCGAAGCTGCACCTCCTAAATCTATAAGAGATGTCGTCGCACTCTTGCAGAATACTCAATTGATTCAACCTAAAAAGTGTCTCGATCATAGCCCTAGTTCCGACGTTTCAAATAGGAAACCGTTGAAAGATGCAGGCAAAGTTTGGGAGTTAGATATGAAAGATGTTATACTAGTGACACCGAACAATGTTGAAGATAACAATTCGCCAAGAGGTCCAAGATTATCGGCGGGAAGCCTCTCGACACAAACTTCATCAAATCAAAGTTCTCCTGCCAACAGTAATGACAGTTCAGGGAAATGTAGTTCCGGAAACCATGAAGTAATAAGTTCGGACAGTTCCAAGTGCTTATTTTCGCCAAAACCACCGATACAGACGCACATTGAGGCGGAAATAAAGAAATTAAAACTAGAATTGAGGAAAACGTCGGAGCAGTATGGTATGGCTTGCAGACAAGCAGTTTTAGCGAAACAGAAGACGAATGAGCTTGAAAGGTTTAGGGAAGAAAAAGAACGAAATGTCGAAAAAGCACGGCTTGCAGAAGAGGTTGCATTAGCTTTAGCAGGAGTAGAGAGACAGAAAGCGAAAGTTGCTATGGACACAGCAGAAATGTTGCAGCGTCTTGCAGAAATGGAAACTCAGAAGAGAAAGCTAGCCGAATTAAAAGCGAAACACGAAGAAGAAGAGAGGAGAAGGACGTTACAAGATGTTGTGTATAATAGTATTCCATATAGAAGATACAACATTAAAGAAATTGAAGTTGCAACTAATGGCTTCGACGATGCTCTCAAAATCGGGGAAGGAGGGTACGGACCTGTTTTTAAAGGTGTCCTTGATCACACCCTTGTTGCCATAAAGGTTCTTAGACCCGATTTAGCTCATGGAGAAAGACAGTTTCAACAAGAGATTATTGTTTTGAGTACCATAAGACATCCCAACATGGTGCTCCTTCTAGGCGCATGTCCAGAGTTTGGTTGCCTTGTCTACGAACACATGGAAAACGGAAGTTTAGAAGATCGCCTATTCCGAAAAGACCATACTCCACCAATTCCATGGAAGAATCGTTTCAGAATCGCATTAGAGATTGCGACTGGCCTTCTTTTCCTTCACCAAGCAAAACCCGAGCCAATAGTACATCGCGATATGAAACCAGCAAACATTCTCTTAGACAGAAACTGTGTCAGCAAGATCAGTGATGTTGGTTTGGCGCGACTCGTTCCACCTTCCATAGCAAACAAAACCACTCAATATCGCTTGACAGGTGCGGCCGGAACATTTTGTTACATTGATCCGGAGTATCAGCAAACCGGGTTATTAGGTGTGAAATCGGATATATATTCATTTGGTATGGTGTTACTACAGATTATTACTGCAAAACCTCCAATGGGATTGTCTCATTTGGTTGAAAAGGCTATTGGAAAAGGGAACTTCTTAGATGTGCTTGATCCAAGTGTACCAGATTGTCCTGTTGAAGAGGCTTTGGCATTTGCGAAGTTGGCGATAAAGTGTTGTGAGTTGCGAAAACGCGATAGACCTGATCTTAGTACTGTTATTTTGCCAGAGCTTAATAGAATATCACAGATTTGGAACTGCGATGAGGATTGA 2148 0.4218 MQRIKPECQTIVRTTVIPINASRNSQVAVKWAVDNLLKKNSNCILIHVRTKPITNSDDNVDHNAPKHGRPPTQEELHQFFLPFRGFCARKGILAKELVLHDIDVPSALTDYAVENPVNNVVVGASSSPWSAFMRRFKEADVASILAKTLPESSTLYVISKGKVQKIQPSGPRIPRDDQSKNIEAAPPKSIRDVVALLQNTQLIQPKKCLDHSPSSDVSNRKPLKDAGKVWELDMKDVILVTPNNVEDNNSPRGPRLSAGSLSTQTSSNQSSPANSNDSSGKCSSGNHEVISSDSSKCLFSPKPPIQTHIEAEIKKLKLELRKTSEQYGMACRQAVLAKQKTNELERFREEKERNVEKARLAEEVALALAGVERQKAKVAMDTAEMLQRLAEMETQKRKLAELKAKHEEEERRRTLQDVVYNSIPYRRYNIKEIEVATNGFDDALKIGEGGYGPVFKGVLDHTLVAIKVLRPDLAHGERQFQQEIIVLSTIRHPNMVLLLGACPEFGCLVYEHMENGSLEDRLFRKDHTPPIPWKNRFRIALEIATGLLFLHQAKPEPIVHRDMKPANILLDRNCVSKISDVGLARLVPPSIANKTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDIYSFGMVLLQIITAKPPMGLSHLVEKAIGKGNFLDVLDPSVPDCPVEEALAFAKLAIKCCELRKRDRPDLSTVILPELNRISQIWNCDED* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4254 715 Gene3D Phosphorylase Kinase; domain 1 420 512 - -
Psa4g4254 715 Coils Coil 306 326 - -
Psa4g4254 715 MobiDBLite consensus disorder prediction 242 287 - -
Psa4g4254 715 CDD STKc_IRAK 446 706 - -
Psa4g4254 715 Pfam Protein tyrosine and serine/threonine kinase 445 698 IPR001245 GO:0004672|GO:0006468
Psa4g4254 715 CDD STK_N 14 161 - -
Psa4g4254 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 558 570 IPR008271 GO:0004672|GO:0006468
Psa4g4254 715 Coils Coil 337 364 - -
Psa4g4254 715 MobiDBLite consensus disorder prediction 166 187 - -
Psa4g4254 715 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 14 709 - -
Psa4g4254 715 Coils Coil 382 412 - -
Psa4g4254 715 Pfam Universal stress protein family 14 130 IPR006016 -
Psa4g4254 715 ProSiteProfiles Protein kinase domain profile. 440 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4254 715 PANTHER OS02G0152300 PROTEIN 14 709 - -
Psa4g4254 715 Gene3D Transferase(Phosphotransferase) domain 1 513 712 - -
Psa4g4254 715 Gene3D HUPs 13 144 IPR014729 -
Psa4g4254 715 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 126 - -
Psa4g4254 715 SMART serkin_6 440 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4254 715 SUPERFAMILY Protein kinase-like (PK-like) 415 699 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4254 Psa-Chr4 375936762 375940017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4254 15 715 Receptor kinase-like Gene Family AT1G17540 47.067 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Psa4g4254 PK_Tyr_Ser-Thr 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4254 - - gmx:100799611 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4254 4 375936762 375940017 Psa4g4254 4 375936762 375940017 ECH
Psa4g4254 4 375936762 375940017 Psa5g6689 5 557713087 557715654 PCT