Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4248 TTTACTGGAATTTGCTTCTACAACGTATTTGAAGGATTTAAGCTGCTTTTAGATAAAGAAGGGGCTTTTCAAGATGGTAGGGATTTGGTATGGTCGGGCAACATGGGTCTAGAGGATTGTTTAGGTTATTTAAAAGCGTCAGTTTGTGGATGGGGTTGCGGGAGTTGCGCGCCGGTATTGGATGACAACCAGCCTGGGTGTGAGCACCAACCAGACCATTTGGCTAGCGAATTGACTCGCGCCACCGGGCGGCTGGGTCGAGCTTCAGTTAGATTTATTGATGTTATGAAGCTTATACTCTCGTATCCGGAAGCCGATGTGAATTTTGCTTATGGGGTGAATAAAAGCACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCTGTTAATATTGTTGATGCTGTTAGGCTTCTTATAACGGCGGGTGCCCATGTTAGTTGTGTTGATGCCGATGGTAATCTTCCTTTTGATGTCATTGTTGTTACTCCCAAGCTGCAAAGAATTAAAGCAGTTCTCGAGGAACTTCTTTTGGATAATGGTTCTGATAACGGATCTGTTGATGTCGTGCCTAGTGATGTTCCTAGCAGTATGGAACCATTGGCTGTGGAAAAGCGCACAGGAATCAATAATTCTCCTCACTTTCCTATAACAAAACTGCTAATGAATCTTGATCGTTCAAACACGCATGTGCATCCTAAGCCATCCAATGTTAAGAAACCGAATTCCAGGAATCATACTGAAAAACATAATGTAAACAATGGTTCATCCGCTTCATCTGCCTTGCAAAAATCAACTACAGGAGTTATGACAGGTTTGACACCTCCTGAATCAGGTTCTTGTAAGAAAGTGGCCTCGATGAGTTTGGCTGAGAATCAATTGACTGGTGCATTGCCACCAGAATTTGGAAATCTTATCAGTCTTCAAGTCTTGATGAACAAGCTTAATGGAGATACGTGGAAGAAGTGTGTTAAAGCTAAAATTGATACAACCGATACGAAAACTGGTTCAACCCGTGTTGTTTCTCAGCCTACCAAGCCAACACCATCAGATGTTTCTCACTCTGGAAGACAAAAAAAAGAGAGAACTAAAGGACCCTCTGAGAATGTTATTCAACCTTCGACATCCGAAGAATTCCCAATGTAA 1140 0.4281 FTGICFYNVFEGFKLLLDKEGAFQDGRDLVWSGNMGLEDCLGYLKASVCGWGCGSCAPVLDDNQPGCEHQPDHLASELTRATGRLGRASVRFIDVMKLILSYPEADVNFAYGVNKSTALHCAASGGSVNIVDAVRLLITAGAHVSCVDADGNLPFDVIVVTPKLQRIKAVLEELLLDNGSDNGSVDVVPSDVPSSMEPLAVEKRTGINNSPHFPITKLLMNLDRSNTHVHPKPSNVKKPNSRNHTEKHNVNNGSSASSALQKSTTGVMTGLTPPESGSCKKVASMSLAENQLTGALPPEFGNLISLQVLMNKLNGDTWKKCVKAKIDTTDTKTGSTRVVSQPTKPTPSDVSHSGRQKKERTKGPSENVIQPSTSEEFPM* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4248 379 ProSiteProfiles Ankyrin repeat region circular profile. 114 148 - -
Psa4g4248 379 Gene3D Ribonuclease Inhibitor 216 332 IPR032675 -
Psa4g4248 379 PANTHER UNKEMPT FAMILY MEMBER 93 193 IPR045234 -
Psa4g4248 379 MobiDBLite consensus disorder prediction 329 350 - -
Psa4g4248 379 MobiDBLite consensus disorder prediction 365 379 - -
Psa4g4248 379 MobiDBLite consensus disorder prediction 228 275 - -
Psa4g4248 379 ProSiteProfiles Ankyrin repeat profile. 114 149 IPR002110 GO:0005515
Psa4g4248 379 SUPERFAMILY Ankyrin repeat 92 174 IPR036770 -
Psa4g4248 379 MobiDBLite consensus disorder prediction 246 272 - -
Psa4g4248 379 Gene3D - 12 186 IPR036770 -
Psa4g4248 379 MobiDBLite consensus disorder prediction 329 379 - -
Psa4g4248 379 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 93 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4248 Psa-Chr4 374933294 374935439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4248 93 175 C2H2 Transcription Factor Family AT5G12850 54.217 2.88e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4248 - - cam:101514203 156.377