Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4239 ATGGACTCGCGCGCACAGTATAATCCTCGCACCGTTGAAGAAGTTTTTAGGGATTTCAAGGGTCGTCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGATTTCTATAACCAATGTGATCCTGATAAGGAGAATTTGTGCTTATACGGCTTTCCTAGTGAGCAGTGGGAAGTTAATTTACCTGCTGAAGAAGTTCCACCGGAGCTTCCCGAGCCTGTGCTTGGAATTAACTTTGCCAGGGATGGCATGCTTTTCCTAGTGAGCAGTGGGAAGGATGGCATGCAAGAAAAAGATTGGCTGTCTTTAGTTGCTGTTCATAGCGATTCATGGTTACTTGCTATTGCCTACTATTTTGGAGCCAGATTCGGGTTTGACAAATCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCATCGATATTTGAAGTTGTTACTGGTACAGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGAAGCAAATCCAAGTCCAGCTCAAAAGTGCAGCGAGCTTCAGAACCCCAGGTTAAGCAGACAAAGGCGTTAGAACCTAAAGACGAGGAAGAAGAACTGGATGAGGAAGATGAAGATGAACATGGCGAGACCTTATGCGGTGCATGCGGTGAGCATTATGGAACAGATGAATTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACACCTGCCAGGGCTGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAACAAGAGAGCTCGCCCATAA 801 0.4507 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPDKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMLFLVSSGKDGMQEKDWLSLVAVHSDSWLLAIAYYFGARFGFDKSDRKRLFNMINELPSIFEVVTGTAKKQVKEKSSVSNHSGSKSKSSSKVQRASEPQVKQTKALEPKDEEEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRARP* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4239 266 MobiDBLite consensus disorder prediction 156 205 - -
Psa4g4239 266 MobiDBLite consensus disorder prediction 156 184 - -
Psa4g4239 266 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 266 - -
Psa4g4239 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 260 IPR013083 -
Psa4g4239 266 Pfam Alfin 11 150 IPR021998 GO:0006355|GO:0042393
Psa4g4239 266 SMART PHD_3 211 259 IPR001965 -
Psa4g4239 266 Pfam PHD-finger 212 260 IPR019787 -
Psa4g4239 266 ProSiteProfiles Zinc finger PHD-type profile. 209 261 IPR019787 -
Psa4g4239 266 CDD PHD_AL_plant 211 261 IPR044104 -
Psa4g4239 266 ProSitePatterns Zinc finger PHD-type signature. 212 258 IPR019786 -
Psa4g4239 266 SUPERFAMILY FYVE/PHD zinc finger 201 262 IPR011011 -
Psa4g4239 266 PANTHER CPG BINDING PROTEIN 6 266 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4239 Psa-Chr4 374669557 374672881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4239 5 265 Alfin-like Transcription Factor Family AT3G42790 71.648 1.34e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Psa4g4239 Alfin 2.5e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4239 - - gmx:100170700 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4239 4 374669557 374672881 Psa5g6686 5 557546266 557551039 ECH
Psa4g4239 4 374669557 374672881 Psa4g4239 4 374669557 374672881 ECH
Psa5g6686 5 557546266 557551039 Psa4g4239 4 374669557 374672881 PCT