Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4238 ATGAAAACAATGAAGCATTCATTGACATGGGGGACTCTTTCTGAATCTGATGTGCAACAATCTTCCATGTCTGAAAATCTTACCTTGAAAATGAGTCTTTTGCCTCAACAATGCCATAAGACTAAGGCACTAGATTTTCAATTTCAAGATCAAGATTCTTCTTCTACTCAATCAACTGATCAATCTTATCTCGAAGTCAATTCGGGGCAATCAGGTCCAATTTCTGTCCAGTATAGCAATTCTTCTGCATTCCCTCATGCTGAGACATGCTTTAGTGGCCCATTAGCAGCTCCAAATGGATCACAGAATAATATTCATCCTGCTCAACTAGTAGGAATGGCTCCGGTTCGGGTTCCTTTGCCTCTTGATCTTTGTGAGGCACCTATATACGTGAACGCGAAGCAATACCATGCTATTATGAGACGTAGAGAGTATCGTGCAAAGCTCGAGGCACAAAACAAACTCATCAAAAATCGGAAACCATATCTACACGAATCGCGCCATCTGCACGCATTGAAGAGAGCTAGAGGTAGCGGTGGACGTTTTCTAAACACCAAAAAGCTCAAAGACCTAAAGCTTACTTCAGCACACGACGGTCTTAATGTTTCCACCACTACTCAGTTGAATCCGAGTGAAAATGTACCGGAACCTAAGGCGAATCAAGTGGAAAACTATAGAGACGGTGCTTCTGCAACCACATGTTCTGATGAGACAAGTGCTTCTAATAGTGATGACATGATCCAACAACATGAATCCGACTTCAGATCATGTGGATACCCTTCTCAAATGCAGGGTTTCTCGACCGATATCGGTGGTGGTGGAAATCAACACCGTCTATCGGTCCTTATGTGA 852 0.4284 MKTMKHSLTWGTLSESDVQQSSMSENLTLKMSLLPQQCHKTKALDFQFQDQDSSSTQSTDQSYLEVNSGQSGPISVQYSNSSAFPHAETCFSGPLAAPNGSQNNIHPAQLVGMAPVRVPLPLDLCEAPIYVNAKQYHAIMRRREYRAKLEAQNKLIKNRKPYLHESRHLHALKRARGSGGRFLNTKKLKDLKLTSAHDGLNVSTTTQLNPSENVPEPKANQVENYRDGASATTCSDETSASNSDDMIQQHESDFRSCGYPSQMQGFSTDIGGGGNQHRLSVLM* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4238 283 Gene3D - 125 186 - -
Psa4g4238 283 MobiDBLite consensus disorder prediction 225 246 - -
Psa4g4238 283 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 81 258 IPR001289 GO:0003700|GO:0006355
Psa4g4238 283 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 11 90 IPR001289 GO:0003700|GO:0006355
Psa4g4238 283 MobiDBLite consensus disorder prediction 201 218 - -
Psa4g4238 283 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 128 182 IPR001289 GO:0003700|GO:0006355
Psa4g4238 283 ProSiteProfiles NF-YA/HAP2 family profile. 125 185 IPR001289 GO:0003700|GO:0006355
Psa4g4238 283 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 11 90 - -
Psa4g4238 283 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 81 258 - -
Psa4g4238 283 MobiDBLite consensus disorder prediction 201 246 - -
Psa4g4238 283 SMART cbf3 124 185 IPR001289 GO:0003700|GO:0006355
Psa4g4238 283 ProSitePatterns NF-YA/HAP2 subunit signature. 130 150 IPR018362 GO:0003677|GO:0016602
Psa4g4238 283 PRINTS CCAAT-binding transcription factor subunit B signature 128 150 IPR001289 GO:0003700|GO:0006355
Psa4g4238 283 PRINTS CCAAT-binding transcription factor subunit B signature 159 182 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4238 Psa-Chr4 374604588 374606767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4238 7 281 CCAAT-HAP2 Transcription Factor Family AT1G17590 38.629 8.31e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Psa4g4238 CBFB_NFYA 9.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4238 K08064 - gmx:100500765 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6685 5 557538762 557542571 Psa4g4238 4 374604588 374606767 PCT