Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4230 ATGTATCTCCCCATTGGGATTCTAATCATTGGAGTACCGGTAATTGCTTTTATATTTTTCTGTCTCACAATGTTAGGATGGTGCAAGATTACCAATCATGAATCAACTCTTCCTACAAGGGGCATAACTTTCGATGAGAAACTTTCTGCTTGCATGAGTTTAGAGTCACATTCGATCACATTCATGTACAAGGAAGGTGATGATGCTGCACATGGCATAAACCAGACTGAATGTGTCATCTGCTTAACAGTCTTTCGAGAAGACGAAAGCGTTCGGAAGCTTCACACTTGCAAGCACATGTTTCATACAACTTGCATCGATAAATGGCTTAGTTCTTGTTCTGGCTGTCCGCTGTGTCGCTCGCAGATTAACAAAACAACTTTGCCAAATTGTGCAGTGGCAAATGAACAGATGATTGTGGACATTGTTGAGTCTAGAATTTGA 444 0.4077 MYLPIGILIIGVPVIAFIFFCLTMLGWCKITNHESTLPTRGITFDEKLSACMSLESHSITFMYKEGDDAAHGINQTECVICLTVFREDESVRKLHTCKHMFHTTCIDKWLSSCSGCPLCRSQINKTTLPNCAVANEQMIVDIVESRI* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4230 147 SUPERFAMILY RING/U-box 77 126 - -
Psa4g4230 147 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
Psa4g4230 147 Pfam Ring finger domain 77 120 IPR001841 -
Psa4g4230 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 128 IPR013083 -
Psa4g4230 147 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 39 134 IPR044675 -
Psa4g4230 147 SMART ring_2 78 119 IPR001841 -
Psa4g4230 147 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 39 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4230 Psa-Chr4 374157592 374158035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4230 6 123 C3H Transcription Factor Family AT2G42360 32.520 4.86e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4230 - - gmx:102661636 188.348