Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4224 ATGGAAACAGTGATTGGGATCGATGATTATGATGATGGGAAGCTTGATGACAGTGGAGTTGATAGAAGCAGTTCTGCTTTGTCTTCGCCTAAACAGATTTCTAACCCGGTTGTGTACAAACTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCCGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGAAATGCGTGTTGTTGCAGACACTGGACAGAGTTTGGAATGCATATCAATCGAAAGATCATCTTCTGGGAAGCTTCGGTTGGAGTGCTCGGAAGGCGTTTCACAATTAGGCACTGCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGATGCTGCAGAAGGTTAAACAGGAAGAGAAACTTCGCTTGTCGTCTCGATCACCCATTCGTTCTCATGTACAAATAGATAGCCAGTGTTCTGCTGATAAATTTCCTGTCATAAATGAGAAGGACCAAGAAGCACCTTCTATAGCATCGAGTTTAAATTATTGTCATAGTAACCAATCTGGGAGTATTGATCAGTGTTCCAGACCTTCAGAAGGAGTCATAGAAAGTGGATCATCTGCTTCTGCCGTCTATTCCCCTTTGAAGCCTGATTTTTCCATGACAGACGGAGAAATATGTTTAGACAAGCTGTCGATCAAAGAACTTCATGAACTGTTTAAAGTCACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAGTGGTTGAAGAGGAGGATTGCTATGAGTTTAACTAACTCTTGTGATGTTTCAGCAACAACATTCACTATAAAAGATAACAAAATAAGTAGAAAACGGGAAGAAGAATGTTCTGCAAATGTGAATGCTGCAGCTGTAATCTCTGTGGAAAATATGGCTGGTGAAGGGGATGTCAAGTATGCGAATTCATATGCAGTGGAGGGTTACACGGTTGATGATATCCAAGTTGCTTCTGAAACAAGACTGGACAATCTTCATACGGAACATGAATTAGGAGATGAGGATCAGCAGAGAGAACAAAGAGCTGCGAAAAGAATGCGTAAGCCCACTAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAGTACAATCCTAGGTCGTCAAGTTCTAATAGAAATACAGGACACAGACATGTTTCTCCAACTTCTTACATCAGGCCTGCTAGGAATGCTTTTCCGGAGGTAAGAACATTTGTCACTAGGTTTGACTCTCTTGGAGGTTCTGGTGTCCAAATTCCATGTGTTTCTCGGGTCCGAAGAAGCCGTCCAAGGAAAAATATCACGTCTCTTATGAAATTCCATCCAACTGGCATGGTTGAAGCTGCAAAATTAAGCAATAATGCCGTTAGCGGTCATGGTTCTGACACTGATAGTGAGATTCAGGAGAAAGTCTCAAAGCCAAGTTCCATGCCTGTGAAGATTCATCAGCTGTCTACTTCTGAATCTGGAAAAGAGAAGCAGTGTGCGATAATTGGCACAACTGAATCAAGGCAGGAATTGAGACCAAATAAGATCGATCCACCTAGTCATACTGCAGAGAGCAACATGGTAACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACCCTTGCCGAGGTAACGAAATTGATTGAAGGTGTGTCACGTTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCAATCCTTTTCCTCATACTCACATCGAACCTCTGTTGATCTCAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTCGCCCATACACCTGCAGATGAGGGGATGAATTCACGAAAGAATGGTACTGCTCCGATTCCTGAGCATATTTTAGTTCGTGTAAGAGATCTTGCAGCGATGAATTCTCAGGTTCCTCCACATTTCAGCTCAAGCAAGTTAACAACTGGTGCAGCTAGTGTGCATGGAGATAGATTGGGGTACTTGTAG 1962 0.4302 METVIGIDDYDDGKLDDSGVDRSSSALSSPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSEMRVVADTGQSLECISIERSSSGKLRLECSEGVSQLGTAEADLGKLNAKFQMLQKVKQEEKLRLSSRSPIRSHVQIDSQCSADKFPVINEKDQEAPSIASSLNYCHSNQSGSIDQCSRPSEGVIESGSSASAVYSPLKPDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSATTFTIKDNKISRKREEECSANVNAAAVISVENMAGEGDVKYANSYAVEGYTVDDIQVASETRLDNLHTEHELGDEDQQREQRAAKRMRKPTKRYIEELSENESREYNPRSSSSNRNTGHRHVSPTSYIRPARNAFPEVRTFVTRFDSLGGSGVQIPCVSRVRRSRPRKNITSLMKFHPTGMVEAAKLSNNAVSGHGSDTDSEIQEKVSKPSSMPVKIHQLSTSESGKEKQCAIIGTTESRQELRPNKIDPPSHTAESNMVTVPTAKGGMRRKHHRAWTLAEVTKLIEGVSRCGPGRWSEIKRQSFSSYSHRTSVDLKDKWRNLLKASFAHTPADEGMNSRKNGTAPIPEHILVRVRDLAAMNSQVPPHFSSSKLTTGAASVHGDRLGYL* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4224 653 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 533 592 IPR017930 -
Psa4g4224 653 MobiDBLite consensus disorder prediction 369 387 - -
Psa4g4224 653 MobiDBLite consensus disorder prediction 330 391 - -
Psa4g4224 653 Pfam Myb-like DNA-binding domain 540 588 IPR001005 -
Psa4g4224 653 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 653 - -
Psa4g4224 653 PANTHER TRF-LIKE 3 1 653 - -
Psa4g4224 653 MobiDBLite consensus disorder prediction 330 368 - -
Psa4g4224 653 ProSiteProfiles Myb-like domain profile. 541 588 IPR001005 -
Psa4g4224 653 Gene3D - 528 635 - -
Psa4g4224 653 MobiDBLite consensus disorder prediction 457 493 - -
Psa4g4224 653 MobiDBLite consensus disorder prediction 478 493 - -
Psa4g4224 653 SUPERFAMILY Homeodomain-like 539 598 IPR009057 -
Psa4g4224 653 SMART sant 537 590 IPR001005 -
Psa4g4224 653 CDD SANT_TRF 539 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4224 Psa-Chr4 373928862 373938764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4224 541 587 Single Myb Histone (SMH) Gene Family AT1G72740 44.898 9.57e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa4g4224 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4224 - - mtr:MTR_8g020330 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4224 4 373928862 373938764 Psa4g4224 4 373928862 373938764 ECH