Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4211 ATGGGTAGAATTCCCAAGGAGATTAATAAAGGTGCTTGGTCTCGTGAAGAAGATGATATTCTCTCTAAATATGTTGCCATTCATGGAGAAGGAAAATGGCAAAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGTTGTAGACAAAGATGGTTGAATTATCTAAAACCAGGTATAAAGAGAGGCGACATTTCCACAGATGAAGAAGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGTCTTTGATAGCTAAGAGATTACCGGGACGAACAGATAATGAAATCAAGAACTATTGGAATACGAATCTATCAAAGAGGTTACAAAAACAACCTACATCCTCATCATTTTCTGTCTCACTTCAAAACAATCACAACAAATGTGGACATATAGCACCAGAAGCTCCAAGGCCAAGGAGATTGAAGATTGTTCATCAATACAACAAAATTTTGGAGAATAATAACAATGGAAGTGAGTGTGATCAAGGAAGCGATGAAACCTCAATTGCCGATTTCCTCATCGACAACGATCATCAAGACAATTTGTTGGCTTGTGATGATGAGTCCAACACTACCAACTCAAAGATTCCACAAATGGAAGAAGATCACAAGAAGGTAGTTTCAACCAATAGTACTCATAACTCATCATCACCTTCTGATCATTTTCATCTTTCATCGGAGAAACTCGATCCTCTAGATAACCTTTTGGATGTGGAGCTCAAGAAAATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 771 0.3774 MGRIPKEINKGAWSREEDDILSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKRLQKQPTSSSFSVSLQNNHNKCGHIAPEAPRPRRLKIVHQYNKILENNNNGSECDQGSDETSIADFLIDNDHQDNLLACDDESNTTNSKIPQMEEDHKKVVSTNSTHNSSSPSDHFHLSSEKLDPLDNLLDVELKKMASFLGLEND* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4211 256 MobiDBLite consensus disorder prediction 197 228 - -
Psa4g4211 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Psa4g4211 256 Gene3D - 4 63 - -
Psa4g4211 256 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Psa4g4211 256 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Psa4g4211 256 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Psa4g4211 256 CDD SANT 12 57 IPR001005 -
Psa4g4211 256 PANTHER MYB TRANSCRIPTION FACTOR 6 251 - -
Psa4g4211 256 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 251 - -
Psa4g4211 256 SMART sant 62 110 IPR001005 -
Psa4g4211 256 SMART sant 9 59 IPR001005 -
Psa4g4211 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Psa4g4211 256 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Psa4g4211 256 CDD SANT 67 108 IPR001005 -
Psa4g4211 256 Gene3D - 66 136 - -
Psa4g4211 256 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4211 Psa-Chr4 373192836 373194637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4211 7 112 MYB Transcription Factor Family AT5G40330 66.038 6.66e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g4211 Myb_DNA-binding 7.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4211 K09422 - gmx:547568 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4211 4 373192836 373194637 Psa4g4211 4 373192836 373194637 ECH