Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4209 ATGAGTAACTGGTTAGGCTTTTCTCTCTCCCCACACTTGAGGATTGGTGAAGATTTTGGTACAGAAAACCAAAACCAAAACCATGGAGAAGGTTCAGAAACTGGAAGAAACTATGTTCCTTCTTCTCCTCATCCTCATCCTCATCCTCATCAACACCTTTCTGTTATGCCTCTACGATCTGATGGTTCACTTTGTGTTTCTGATTCCTTTACACCTCAAGAGATTGAAACAGGAGAGAATCATACTCATCATAATCATAATCATCATAATCATCATAATCATAATCACAATCACAATCACAATCACAATCACAATCATCTATCAAACCAATCTCTGATTCACTCTTTCCATCATGCATACAACGATAACAACAACAATCATCACGCTTTAATCAACAATAGTACTATGTACAAGTCTTGGATGACTCAGACTCAGTTTTCTGATGGGAAAACTTCTAATGATGGAAATGGTTGTAGCTTTCAATCTCTTAATTTAACTATGAGTCCAAGTATGCCAAATGGTGTAAGTGTTGGTGTTGTTGGTGGTGGTGGTGCAATTTCTAATGTTCAGATGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTGGTTCTGCTAGAGAACCTGTCCCTCGCAAATCTATTGATACTTTTGGACAAAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGACAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGATTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAAAAGGAACTTGAAGAAATGAAGAACATGACTAGGCAAGAATTTGTGGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGAATCGGAAGGGTTGCGGGAAACAAAGACTTGTATCTTGGTACATTTAGCACACAAGAGGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAGTTTAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTCGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATAGCCGGAGATCTCGCGAAACGGTCACCTAAGGAATCCGCGCCTCCTGCTGCAGCCACTGCCGAGGAGTTCAATCCGTGCGGGAGTACGTCGACACCTTCTCATCCGCCTCCTCTAGTTATTACCGACGGCGAACAGCAGCATTCTGATGAATTGTCCAACATGGTGTGGAATTCAAACAAGGATGAACAACCACCGCAGAACGAGTGCGGAAACAACACCAACGTCAACGTCGTCGCTGAATCGTCGCAGCTCGGTGACGGTTCGCCAAGCAACAAGAATGAGATGAACAAATTACCTAATGAGTTTGGAGGGAGTGGAGCAGATTATGGACATGGTTACTTCACACTGCAAGGACCAAAGTTTGATGATGGAAACAATGAAAATGACCACATGAATAACAATAGGCTTGGGAATTTGGGCTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1662 0.4164 MSNWLGFSLSPHLRIGEDFGTENQNQNHGEGSETGRNYVPSSPHPHPHPHQHLSVMPLRSDGSLCVSDSFTPQEIETGENHTHHNHNHHNHHNHNHNHNHNHNHNHLSNQSLIHSFHHAYNDNNNNHHALINNSTMYKSWMTQTQFSDGKTSNDGNGCSFQSLNLTMSPSMPNGVSVGVVGGGGAISNVQMNEDPRKRSLSKSGSAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESAPPAAATAEEFNPCGSTSTPSHPPPLVITDGEQQHSDELSNMVWNSNKDEQPPQNECGNNTNVNVVAESSQLGDGSPSNKNEMNKLPNEFGGSGADYGHGYFTLQGPKFDDGNNENDHMNNNRLGNLGLVNQVPMFALWNE* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4209 553 MobiDBLite consensus disorder prediction 24 50 - -
Psa4g4209 553 MobiDBLite consensus disorder prediction 187 219 - -
Psa4g4209 553 ProSiteProfiles AP2/ERF domain profile. 326 384 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 Pfam AP2 domain 325 376 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 Pfam AP2 domain 224 282 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 CDD AP2 325 386 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 Gene3D AP2/ERF domain 223 292 IPR036955 GO:0003700|GO:0006355
Psa4g4209 553 Gene3D AP2/ERF domain 326 386 IPR036955 GO:0003700|GO:0006355
Psa4g4209 553 SUPERFAMILY DNA-binding domain 223 292 IPR016177 GO:0003677
Psa4g4209 553 MobiDBLite consensus disorder prediction 24 39 - -
Psa4g4209 553 SUPERFAMILY DNA-binding domain 325 386 IPR016177 GO:0003677
Psa4g4209 553 SMART rav1_2 224 296 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 SMART rav1_2 326 390 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 CDD AP2 223 292 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 PRINTS Ethylene responsive element binding protein signature 225 236 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 PRINTS Ethylene responsive element binding protein signature 366 386 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 ProSiteProfiles AP2/ERF domain profile. 224 290 IPR001471 GO:0003700|GO:0006355
Psa4g4209 553 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 4 484 - -
Psa4g4209 553 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 484 - -
Psa4g4209 553 MobiDBLite consensus disorder prediction 405 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4209 Psa-Chr4 373170691 373173768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4209 1 412 AP2-EREBP Transcription Factor Family AT1G72570 50.225 9.10e-135 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa4g4209 AP2 6.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4209 K09285 - gmx:100809762 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4209 4 373170691 373173768 Psa4g4209 4 373170691 373173768 ECH