Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4206 ATGATGAGTAGTGCAAGTTCAAGAAATAGGTCACCTTTTACACCAAATCAATGGCAAGAGCTTGAACAACAAGCTCTTGTTTTCAAATACATGGTTACAGGAACACCTATTCCACCAGATCTTATCTTCTCTATCAAAAGAAGCTTGGACACTTCTATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAGTACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTAGTTGTGTCTTCATCATCATCAACAACAACACACACAAACTCAATCTCTCTATCTCAATCTCAATCTCAATCTCATTCTCAAACAAATACCAGAAACCTCTCCTTGAACAACAACAACAACAACAACACCTTAACATCACCTTCTTCTTTTCCTTTTCATGAATCTCAACAACAAGCCTTTTCACAACCCTACCAAAACCCTTACTTTTATTCTCAGCAATCTGTTACTGGTTCTAAACCTCTTGATCATTCTGAGTTTCAACCTCATGACGGTTCTACTACTCATCACCTCTTTTTGGATTCTGGATCTTATTCTCACGATGAAAAAGACTACAGGAGGCATGTTCAAGTTCAAGGGATAAGAGATGGAACTATGGATGAGAGAACTTTCTTTCCAGAAGCTTCCGGCTCTTCTAGGAGTTATCATGATTCATATCAACAACAACAACTGAATTCCTTTAAGTCATCATCATACGCAAGCTCACAATTTCAGAACATCAATGATGATGATCCAAGACAGCAACAGCAACAGCAACAACAACAAGAACAGCACTGTTTTGTTTTAGGCACAGATTTCAAATCAACAAGACCAACAACAAACAAGGACAAAGAAAGTGAGACAACTCAGAAACCACTTCATCATTTCTTTGGCGAGTGGACACCAAAGAACACAGATTCTTGGCTAGATCTTGCTTCCAACTCCAGGATCCCAACAGATGAATGA 1086 0.3959 MMSSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDTSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVELVVSSSSSTTTHTNSISLSQSQSQSHSQTNTRNLSLNNNNNNNTLTSPSSFPFHESQQQAFSQPYQNPYFYSQQSVTGSKPLDHSEFQPHDGSTTHHLFLDSGSYSHDEKDYRRHVQVQGIRDGTMDERTFFPEASGSSRSYHDSYQQQQLNSFKSSSYASSQFQNINDDDPRQQQQQQQQQEQHCFVLGTDFKSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTDE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4206 361 MobiDBLite consensus disorder prediction 255 283 - -
Psa4g4206 361 MobiDBLite consensus disorder prediction 104 151 - -
Psa4g4206 361 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 2 360 - -
Psa4g4206 361 MobiDBLite consensus disorder prediction 317 332 - -
Psa4g4206 361 ProSiteProfiles QLQ domain profile. 12 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa4g4206 361 MobiDBLite consensus disorder prediction 309 339 - -
Psa4g4206 361 Pfam QLQ 12 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa4g4206 361 PANTHER - 2 360 IPR031137 GO:0005634|GO:0006351|GO:0032502
Psa4g4206 361 SMART QLQ_2 11 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa4g4206 361 MobiDBLite consensus disorder prediction 119 151 - -
Psa4g4206 361 Pfam WRC 78 120 IPR014977 -
Psa4g4206 361 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4206 Psa-Chr4 372570981 372573809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4206 3 120 GRF Transcription Factor Family AT3G13960 72.881 3.07e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Psa4g4206 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4206 - - gmx:100806024 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4206 4 372570981 372573809 Psa4g4206 4 372570981 372573809 ECH