LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g4185	ATGATCCATCTACTGGTATCTATTGGTATGGACTTTTTTGTCGTCTTGGAGCGTCCTGGTTATTCTGTGGGTTGTCGTCGTAGGTGCAACGCCCGTGTCGGAATCCAACACCGTGTTACCAAGGATGATGCCATGAAATGGTTCCAAGTGAAGTGTTGTAATTTTGCAACTTTGTTGGCGGTGTTGGGAGGACAGCCCAGGCCAAAAGCAGACATTCCAATGGACAAGGAAGGTGGCCTGCCAAATCTGCTAGATTCAATCTTTGATTTGCTCAAGAATGCAGGGAGCAATGCCGAAGTCAAAGGATTGAATGTTGATGTTGTATATATTTCTCATATCCAAGTCAATCAAGCACAGAAGGAAAGACGCCAAACATACAGAGCTCATGGAATAATCAACCCTTACATGTCATCCCCATGCCACATAGAGTTGGTACTATCTGAAAAGGAAGAACCTGTCAAGAAGGAGCCCGAGACCCGATTGGCTTCTAGCAAGAAGAGGGCCTAA	507	0.4556	MIHLLVSIGMDFFVVLERPGYSVGCRRRCNARVGIQHRVTKDDAMKWFQVKCCNFATLLAVLGGQPRPKADIPMDKEGGLPNLLDSIFDLLKNAGSNAEVKGLNVDVVYISHIQVNQAQKERRQTYRAHGIINPYMSSPCHIELVLSEKEEPVKKEPETRLASSKKRA*	169

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g4185	168	CDD	Ribosomal_L22	87	146	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Psa4g4185	168	MobiDBLite	consensus disorder prediction	149	168	-	-
	Psa4g4185	168	SUPERFAMILY	Ribosomal protein L22	86	149	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Psa4g4185	168	PANTHER	RIBOSOMAL PROTEIN L17A	87	164	-	-
	Psa4g4185	168	PANTHER	60S RIBOSOMAL PROTEIN L17	87	164	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Psa4g4185	168	Pfam	Ribosomal protein L22p/L17e	86	147	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Psa4g4185	168	Gene3D	-	4	60	IPR022803	-
	Psa4g4185	168	SUPERFAMILY	RL5-like	8	51	IPR022803	-
	Psa4g4185	168	Gene3D	Ribosomal protein L22/L17	84	168	IPR036394	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g4185	Psa-Chr4	369517586	369518425	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g4185	87	167	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	77.778	3.64e-42	137

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g4185	K02880		-	gmx:100499784	131.724