Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4183 ATGGAAAACCCTAACTATCATTTGTCCTCTAAAATTTTATGCATAGTTATGGGTGTTCAGTTAAAGGCAAAAGTTGACACAGATGAAATTTTTGCTCTAGTTACATTATTCCCATTGCCAGAGCAACAAGAAATTATCTTAGAGGATAATCATGCAATTCAGAGTCCTAGTGAACTGTACTCTTTCAGTCAGATTCTCACTTCATCAGAAATAAGTACACTTGGTGGACTTTATATTTCAAAAGAACATGCTGAGAGATGTTTCCCCCCACTGGATATGACCCTTGAATCACCAATGCATGATCTAGTGGGAAAGGACTTACATGAAAATGAATGGAATTTTCGACATATTTATTGTAGTTATCAGAAAGAACACATGCTTACTAATGGTTGGAGCACATTTGTAAACTCAAAAAATCTTGCTCCTGGAGATTCATGCATTTTTGTCAGGGGTGAGAATGGTGAATTTGGTATTGGGATTCGTCGAGATATGAAGCAACATACCAATGTATGCTGCACAACATCGTCTCAACAGTTTAGGCAAAACATGCAACTTCCACCATTGGTCGCTGCTCATCATGCTGTTTCTACTGGAACTTTGTTCCATGTACAATATTACCCTTGGATTACTCCTTTTGAATATATGGTTCCTCTGAAAACTTATGTTGAGTCAACTGAAAAAGATTACTCAATTGGAACAAGGGTGCAAATGTTGTCTCAAGGATGTACAAAAAGATATGGTACAATAGTTGGTAATGAAGATATTGATCCCATTAACTGGCCTGCTTCTGATTGGAGATCTCTTAAGGTTCAATGGGATTCTATTCCAAATACTTTTACACATCTGGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGAAATATTCCAAGATTAAGGGAATCCATATTCTTCCTTTATCTAAAAAAATTGATGAATATGACTCATTATTGTTTGGATTAAGTGGCTTTGGACTCAAGGATACATTTGGAAGTTCATCCAAACTTGAATATCACAAAGTGGACATGGACTTGCAAGGTCAAGATTACAGTATCAAAAAGCATAAAAAATCAAAAATTCTCAATTTTGCTTTCTGTATATTTATTTGCTTCTTTATATTTGTAATTGCTTTCCTTCGTCCTCTTATGTGA 1149 0.3568 MENPNYHLSSKILCIVMGVQLKAKVDTDEIFALVTLFPLPEQQEIILEDNHAIQSPSELYSFSQILTSSEISTLGGLYISKEHAERCFPPLDMTLESPMHDLVGKDLHENEWNFRHIYCSYQKEHMLTNGWSTFVNSKNLAPGDSCIFVRGENGEFGIGIRRDMKQHTNVCCTTSSQQFRQNMQLPPLVAAHHAVSTGTLFHVQYYPWITPFEYMVPLKTYVESTEKDYSIGTRVQMLSQGCTKRYGTIVGNEDIDPINWPASDWRSLKVQWDSIPNTFTHLERVCPWWIEPLKYSKIKGIHILPLSKKIDEYDSLLFGLSGFGLKDTFGSSSKLEYHKVDMDLQGQDYSIKKHKKSKILNFAFCIFICFFIFVIAFLRPLM* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4183 382 Gene3D - 59 164 IPR015300 -
Psa4g4183 382 Pfam B3 DNA binding domain 62 162 IPR003340 GO:0003677
Psa4g4183 382 PANTHER AUXIN RESPONSE FACTOR 3 361 - -
Psa4g4183 382 SUPERFAMILY DNA-binding pseudobarrel domain 57 162 IPR015300 -
Psa4g4183 382 ProSiteProfiles B3 DNA-binding domain profile. 62 164 IPR003340 GO:0003677
Psa4g4183 382 SMART B3_2 62 164 IPR003340 GO:0003677
Psa4g4183 382 Gene3D - 228 298 - -
Psa4g4183 382 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 361 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa4g4183 382 CDD B3_DNA 61 162 IPR003340 GO:0003677
Psa4g4183 382 Pfam Auxin response factor 191 269 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4183 Psa-Chr4 369454723 369457227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4183 4 355 B3 DNA Binding Superfamily AT5G62000 41.484 1.56e-85 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa4g4183 B3 6.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4183 - - mtr:MTR_8g446900 516.924