Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4152 ATGTATGATGATGAAGATGGCTTGGATCATGCCCAATCTAACCATTCAACGAAGAGAGATCAACCTAGTAGAGAAGCTGCCTGTGCAGGGAAAAAGGATACTGGGAAGACAACAAAGAAGGCCGACAAAGGGAAGACAGCAAAAGAAGAGGCAAGAGAATTGCTACTTAAGGAGGCCTCTTGTGCTTCTGGAGCAACAATGGAAGAAATGGAAGAGAAAAGAAGAAACCAGGTAGTGGCCAAGTTTCATGCAATTCTTAGACCATTTCTTTTGCGCCGAATGAAGTCTGATGTTGAGCTATCGTTGCCCCGGAAAAAAGAGATCATTATTTATGCTAACATGACTGAGCATCAGAAGAACTTGCAGGATCATCTAGTTAACAAGATATTTGAGAAACATTTGGATAGGAAACTAACAATTGGGCGTGCTGCGGGGAGTATTAATAACTTGTTAATTCAACTTAGGAAAGTCTGTAACCATCCCAACCTCTTAGAATCACCCTATGATGGTTCATATTTTTATCCTCCTTTGAATGAGATAATTGAGCAATGTGGAAAATTCCAATTGCTCAACCGGTTGTTGGAGCGGCTATTTTCACGTAATCACAAGAATCTGATCTTCAGTCAATGGACTAAAGTGTTGGATATAATGGATTATTATTTTAGTGAAAAGGGTCTTAAAGTTTGCAGGATTGATAGTTCAGTGAAACTGGATGAAAGGAAATTGACTGGAATCCTCAAATGGATTTGCAGGCCATGGATAGATTTCATAGATTTGGTCAATCAAAGCCTGTTCATATTTTGGCTCACAACTGCACAATCAGTAGAGGGTCGAATGCTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATTTGGTGATAGAGAAGGGACAATTTCATCATAAGCGTACTACGCATTCCATTATGGATGAAATGGAGGAAAAGGATATTTTGGCATTTCTTCGAGATGACGAAATAGCTGAGGACAAAATGATACTGAAAGATATTAGTGATGAAGACCGGGAGAATCTCTTGGATCGCAGTGATCTTATTGTCAATAGCTCAGCTGATGTGAAACCTCCTGTTAGTACCTTTCCCCTTAAAGGACCTGGGTGGGAGGTGGTGATTCCAACTGCATCTGGGGGCATGCTTTCCACTCTCAACAACGCAGTGATCTTATTGTCAATAGCTCAGCTGATGTGA 1203 0.4073 MYDDEDGLDHAQSNHSTKRDQPSREAACAGKKDTGKTTKKADKGKTAKEEARELLLKEASCASGATMEEMEEKRRNQVVAKFHAILRPFLLRRMKSDVELSLPRKKEIIIYANMTEHQKNLQDHLVNKIFEKHLDRKLTIGRAAGSINNLLIQLRKVCNHPNLLESPYDGSYFYPPLNEIIEQCGKFQLLNRLLERLFSRNHKNLIFSQWTKVLDIMDYYFSEKGLKVCRIDSSVKLDERKLTGILKWICRPWIDFIDLVNQSLFIFWLTTAQSVEGRMLKRAFSKLKLEHLVIEKGQFHHKRTTHSIMDEMEEKDILAFLRDDEIAEDKMILKDISDEDRENLLDRSDLIVNSSADVKPPVSTFPLKGPGWEVVIPTASGGMLSTLNNAVILLSIAQLM* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4152 400 Gene3D - 72 102 IPR038718 -
Psa4g4152 400 CDD SF2_C_SNF 175 241 - -
Psa4g4152 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 338 IPR027417 -
Psa4g4152 400 MobiDBLite consensus disorder prediction 1 48 - -
Psa4g4152 400 Gene3D - 103 241 IPR027417 -
Psa4g4152 400 PANTHER SNF2/RAD54 HELICASE FAMILY 48 241 - -
Psa4g4152 400 PANTHER SNF2/RAD54 HELICASE FAMILY 264 388 - -
Psa4g4152 400 Pfam SNF2-related domain 73 163 IPR000330 GO:0005524|GO:0140658
Psa4g4152 400 Gene3D - 261 358 IPR027417 -
Psa4g4152 400 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 48 241 - -
Psa4g4152 400 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 264 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4152 Psa-Chr4 366173591 366174982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4152 83 180 RAD5 or RAD16-like Gene Family AT5G22750 30.841 2.26e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g4152 SNF2_N 2.6e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4152 K19001 - gmx:100777687 439.113