Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4130 ATGGAAGAAGGGTTAGGTCGAAACTCGGTTCCTCCTCCAGGTTCCATTGACAAGTCTAAGATTCTAGATATTAAGCCTATAAGATGTTTGATACCTGTTTTTTCAAAGACTCCTCAAGCTCCGTCTTCGGGACAGTATCCGTCAGGGTTTTCTCCGTTTTTCCCATTTGGTGGACCTCAGGAGAGTTCAACCACTGGGGTGAAACCAAGAGGTAAAGCTATGCCGGCTCCGATTCGATCGTTTAGGAGTCCTCAAGGAGAGGATGAGAATCTCAATGGCAATGATGGTTATAGTCAGAAAAGAAATGCAGTGTCACATTCGAGCCGGGTCAAGTTACAGAAGATCAAACTATGTCATGATTTCCGTGTTGATTTGAGTGGTTTAGTTGGTATAGGCCCGACACAAAAAAATGATGGTAACCGAGAAGTTGTTAATATTGTGCTCATGTCATTTGATGCACTAAGAAGAAGGCTATGTCAACTTGTTAATGCCAAGGAATTGAACATGGGTAAGATCACGCGTGCCGATTTGAAAGCTGGGAATATTTGTTTGTCCAAAGGAATTCGAACAAATGCGACGAAGAGAATTGGATCGGTACCTGGAGTTGAGATTGGGGACATATTCTTTTTCCGAATGGAAATGTGTGTTGTTGGTTTGCATAATCAATCGATGGGGGGAATTGATGCCATCAAGAGTCACCATGAGGATGAGGCTTTGGCTATTAGCATTGTTTCGTCGGGTGAATACGACGATGAAGCTGAGGATGGTGATGTTATAATTTACACCGGTCAGGGTGGGAATTTCAACAAGAAAGAGAAGCATGTGTCTGATCAGAAGCTTCATAGGGGTAATCTTGCTTTGGATAGAAGTTCAAGACAACACAATGAAGTAAGAGTCATCCGGGGAATCAAAGATACTACGGCTTTGAACTCAAAAATCTACGTCTATGATGGTCTGTATAAAATTCAAGATTCATGGACTGAAATATCAAAAGAAGGCGACGGCAGCTTGTTTAAGTATAAGTTGATAAGAGTGCCTGGACAGCCTAGTGCCTTTTCCGTTTGGAAATCGATTCAGAAGTGGAAATCTGGATTTCCTGCGAGGACTGGACTTATTCTCCCCTTTTTCAGCCGCTTCACATTGGTTTCAGCTGCTAGTGCTAAAAAAACATGTGTCCCAGGGGATTTTGGAGGTGATTTTCCGTATATTATCCAGGGTGTTCTGGTGAGCCGGAAGCCGTTGATTCATGAATGTGGCCCTACATGTAAATGTTTTCCTAACTGCAGAAACCGAGTATCTCAAACCGGTCTAAAGCACCAAATGGAAGTGTTCAAAACAAAGGATAAAGGGTGGGGTCTTCGATCATTGGATCCTATTCGTGCTGGCGCTTTTATTTGCGAGTATGCAGGAGAAGTTATTGATAAAGCTAGGTTAAGTCAGCTTATAAGAGAAGGAGATACTGCTGAGTATGTTTTCGATACAACCCGTGTTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGTTACTGGATGAAGTGAGAGCAAATGAGTCTAGTGAGGATTATGCTATGCCACATCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTCGCTCGATTCATGAATCATAGTTGCTCACCAAATGTTTTCTGGCAGCCTGTCTTATACGAAGAGAACAACCAGTCCTTTCTCCATGTTGCATTTTTTGCATTGAGACACATTCCTCCAATGCAAGAGTTAACATACGACTACGGAGCTGATCGATCTGATAACGCTGAGGGTAGCAGTGCACACAAAGGTAGAAAGAAATGCTTATGCGGATCATTGAAATGTCGTGGTTCTTTTACTTGA 1854 0.4213 MEEGLGRNSVPPPGSIDKSKILDIKPIRCLIPVFSKTPQAPSSGQYPSGFSPFFPFGGPQESSTTGVKPRGKAMPAPIRSFRSPQGEDENLNGNDGYSQKRNAVSHSSRVKLQKIKLCHDFRVDLSGLVGIGPTQKNDGNREVVNIVLMSFDALRRRLCQLVNAKELNMGKITRADLKAGNICLSKGIRTNATKRIGSVPGVEIGDIFFFRMEMCVVGLHNQSMGGIDAIKSHHEDEALAISIVSSGEYDDEAEDGDVIIYTGQGGNFNKKEKHVSDQKLHRGNLALDRSSRQHNEVRVIRGIKDTTALNSKIYVYDGLYKIQDSWTEISKEGDGSLFKYKLIRVPGQPSAFSVWKSIQKWKSGFPARTGLILPFFSRFTLVSAASAKKTCVPGDFGGDFPYIIQGVLVSRKPLIHECGPTCKCFPNCRNRVSQTGLKHQMEVFKTKDKGWGLRSLDPIRAGAFICEYAGEVIDKARLSQLIREGDTAEYVFDTTRVYESFKWNYEPKLLDEVRANESSEDYAMPHPLIINAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMQELTYDYGADRSDNAEGSSAHKGRKKCLCGSLKCRGSFT* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4130 617 ProSiteProfiles Post-SET domain profile. 601 617 IPR003616 -
Psa4g4130 617 ProSiteProfiles YDG domain profile. 197 344 IPR003105 -
Psa4g4130 617 MobiDBLite consensus disorder prediction 85 104 - -
Psa4g4130 617 ProSiteProfiles SET domain profile. 439 586 IPR001214 GO:0005515
Psa4g4130 617 Pfam SET domain 450 586 IPR001214 GO:0005515
Psa4g4130 617 SMART G9a_1 192 348 IPR003105 -
Psa4g4130 617 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 376 - -
Psa4g4130 617 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 396 616 - -
Psa4g4130 617 Gene3D - 179 363 IPR036987 -
Psa4g4130 617 MobiDBLite consensus disorder prediction 60 104 - -
Psa4g4130 617 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 396 616 - -
Psa4g4130 617 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 376 - -
Psa4g4130 617 SUPERFAMILY PUA domain-like 179 366 IPR015947 -
Psa4g4130 617 Gene3D SET domain 379 616 IPR046341 -
Psa4g4130 617 Pfam SAD/SRA domain 196 348 IPR003105 -
Psa4g4130 617 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 55 617 IPR025794 GO:0016571
Psa4g4130 617 SUPERFAMILY SET domain 395 614 IPR046341 -
Psa4g4130 617 SMART set_7 439 592 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4130 Psa-Chr4 364306091 364307991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4130 6 616 Su(var)3-9 homologs AT1G73100 46.774 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa4g4130 SAD_SRA 1.3e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4130 K24405 - gmx:100812173 843.958