Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4116 ATGGGAGTTCCAGATAAAGATCCTCTCTCCCAGTTGAGTTTACCTCCTGGTTTCAGATTCTTCCCTACTGATGAAGAGCTTCTTGTTCAGTACCTATGTCGCAAAGTGGCAGGACACCATTTTTCTTTGCCAATTATTGCTGAAATTGATTTATACAAATTCGATCCATGGGTTCTTCCAGGTAAAGCGAATTTCGGTGAGAAAGAGTGGTATTTCTTCAGTCCAAGGGACAGAAAATATCCTAATGGTTCACGACCAAACAGAGTTGCTGGGTCGGGTTACTGGAAAGCTACTGGAACTGACAAAATCATCACCACTGAAGGTAGAAAAGTTGGCATAAAGAAAGCACTTGTTTTCTATATTGGTAAAGCACCAAAAGGCACCAAAACGAATTGGATTATGCATGAGTATCGCCTTCTTGACACTTCAAGAAAACACAACCTTGGTAGCTCCAAATTGGATGATTGGGTTTTGTGTCGCATATACAAGAAGAACTCAAGCTCGCAAAAGGAAGTTCAATCGTTTTCTGGGAAAGAATATAGCAATGGTTCATCGCCTTCTTCATCCTCCCATGTGGAGGATATGTCGGATTCGTTTCCGGTAATTGACGACCAGAGCTTTGCGCTTCCGCGGGTGACATCGCTCAGAATGTTACAGCAAGAGGAGAAGTTCGGGTTTCATAACATGGGCGCCGGAATTTTCTCTGATTGGGTTAACCCAACGGAGTTTGACTCGATACCCGAATTTGATTCCGGGAGCCAAACACAGGGGATGTTGAATTACAGCTGTAGTGACTTTTGTGTCCCTTCAGCTCCGCCGTTTGGCCAGATGGACTTCTCGGCGGGATTTAGGAACCCCACGGAAGAAGAGGTTCAGAGTGGCATGAAGACTCACCGGGTTACCGATAATGATAATTTCAATTTGTATCAGCATAATCAAAATGCGTTTTTGTCGGGCCTAGACGGCCCGTTTGGGTTTGGGTTTTCGGGTCATTAA 996 0.4448 MGVPDKDPLSQLSLPPGFRFFPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPGKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDTSRKHNLGSSKLDDWVLCRIYKKNSSSQKEVQSFSGKEYSNGSSPSSSSHVEDMSDSFPVIDDQSFALPRVTSLRMLQQEEKFGFHNMGAGIFSDWVNPTEFDSIPEFDSGSQTQGMLNYSCSDFCVPSAPPFGQMDFSAGFRNPTEEEVQSGMKTHRVTDNDNFNLYQHNQNAFLSGLDGPFGFGFSGH* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4116 331 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Psa4g4116 331 PANTHER NAC TRANSCRIPTION FACTOR 56 1 310 - -
Psa4g4116 331 MobiDBLite consensus disorder prediction 173 195 - -
Psa4g4116 331 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Psa4g4116 331 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Psa4g4116 331 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 310 - -
Psa4g4116 331 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4116 Psa-Chr4 363535731 363537755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4116 1 265 NAC Transcription Factor Family AT4G27410 63.986 3.68e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa4g4116 NAM 8.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4116 - - gmx:100811301 494.197