Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa4g4114 | ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACAACGATGAAGACGACGACGTTTTCTACTACCGCTACTGCGCTTCGTCCTCAACCCCCAACACCACCACCGGCACCACATCCAGTAACCAACCCCAATCAAAACCGAACAACAAAGGATCATCAATAGGAGGAACAGGTGAACCCTTAGCACCATCAAAATCGACGTTATACGTTTCTAATCTAGATTACTCCCTAACAAACTCCGATCTCCATACGCTCTTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCAAACGCGCCTAAGTCGCGGTGTCGCGTTTGTCCAATTCGTTTCTCGTAATGACGCCCAATGCGCCGTGGCGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTAACTTCTTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGAAAGCGCGTGTACAATACTGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGACCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGAGCGTGGTCAGATTGCTGCGGAGCAGTTAGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAGGTTGCTGGGGAGAAACAGAAATGATGATGAGGGTTTGGACAACAACAAGACGAAGAAGAAAGGGAAGAAACCTGGGTATTTCAATGATGAGAGTGATCATGATGATGATGATTGA | 834 | 0.4904 | MSSKKKHKRKHSDNDEDDDVFYYRYCASSSTPNTTTGTTSSNQPQSKPNNKGSSIGGTGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRQTRLSRGVAFVQFVSRNDAQCAVAEMNKKILNGRTLTSSIAADNGRAPEFIRKRVYNTETALCYECGGHGHLSYECPKNQLGPRPRPQPKKPRRGFSGLRDRDGEEEGDEEEEERGQIAAEQLDDNWASVVDDEAGERLLGRNRNDDEGLDNNKTKKKGKKPGYFNDESDHDDDD* | 278 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa4g4114 | 277 | MobiDBLite | consensus disorder prediction | 206 | 220 | - | - | |
Psa4g4114 | 277 | ProSiteProfiles | Zinc finger CCHC-type profile. | 165 | 180 | IPR001878 | GO:0003676|GO:0008270 | |
Psa4g4114 | 277 | PANTHER | ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 | 13 | 275 | - | - | |
Psa4g4114 | 277 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 67 | 145 | IPR000504 | GO:0003723 | |
Psa4g4114 | 277 | MobiDBLite | consensus disorder prediction | 233 | 270 | - | - | |
Psa4g4114 | 277 | MobiDBLite | consensus disorder prediction | 30 | 56 | - | - | |
Psa4g4114 | 277 | SUPERFAMILY | RNA-binding domain, RBD | 63 | 150 | IPR035979 | GO:0003676 | |
Psa4g4114 | 277 | MobiDBLite | consensus disorder prediction | 30 | 61 | - | - | |
Psa4g4114 | 277 | Gene3D | - | 32 | 222 | IPR012677 | - | |
Psa4g4114 | 277 | CDD | RRM_ZCRB1 | 66 | 143 | IPR034219 | - | |
Psa4g4114 | 277 | Pfam | Zinc knuckle | 165 | 180 | IPR001878 | GO:0003676|GO:0008270 | |
Psa4g4114 | 277 | PANTHER | ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 | 13 | 275 | IPR044598 | GO:0000398|GO:0005689 | |
Psa4g4114 | 277 | SMART | rrm1_1 | 68 | 141 | IPR000504 | GO:0003723 | |
Psa4g4114 | 277 | SMART | c2hcfinal6 | 164 | 180 | IPR001878 | GO:0003676|GO:0008270 | |
Psa4g4114 | 277 | MobiDBLite | consensus disorder prediction | 180 | 277 | - | - | |
Psa4g4114 | 277 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 69 | 138 | IPR000504 | GO:0003723 | |
Psa4g4114 | 277 | SUPERFAMILY | Retrovirus zinc finger-like domains | 155 | 181 | IPR036875 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa4g4114 | Psa-Chr4 | 363466861 | 363467931 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa4g4114 | 66 | 129 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 43.750 | 1.55e-09 | 55.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa4g4114 | K13154 | - | gmx:100814914 | 306.605 |