Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4114 ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACAACGATGAAGACGACGACGTTTTCTACTACCGCTACTGCGCTTCGTCCTCAACCCCCAACACCACCACCGGCACCACATCCAGTAACCAACCCCAATCAAAACCGAACAACAAAGGATCATCAATAGGAGGAACAGGTGAACCCTTAGCACCATCAAAATCGACGTTATACGTTTCTAATCTAGATTACTCCCTAACAAACTCCGATCTCCATACGCTCTTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCAAACGCGCCTAAGTCGCGGTGTCGCGTTTGTCCAATTCGTTTCTCGTAATGACGCCCAATGCGCCGTGGCGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTAACTTCTTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGAAAGCGCGTGTACAATACTGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGACCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGAGCGTGGTCAGATTGCTGCGGAGCAGTTAGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAGGTTGCTGGGGAGAAACAGAAATGATGATGAGGGTTTGGACAACAACAAGACGAAGAAGAAAGGGAAGAAACCTGGGTATTTCAATGATGAGAGTGATCATGATGATGATGATTGA 834 0.4904 MSSKKKHKRKHSDNDEDDDVFYYRYCASSSTPNTTTGTTSSNQPQSKPNNKGSSIGGTGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRQTRLSRGVAFVQFVSRNDAQCAVAEMNKKILNGRTLTSSIAADNGRAPEFIRKRVYNTETALCYECGGHGHLSYECPKNQLGPRPRPQPKKPRRGFSGLRDRDGEEEGDEEEEERGQIAAEQLDDNWASVVDDEAGERLLGRNRNDDEGLDNNKTKKKGKKPGYFNDESDHDDDD* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4114 277 MobiDBLite consensus disorder prediction 206 220 - -
Psa4g4114 277 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676|GO:0008270
Psa4g4114 277 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 275 - -
Psa4g4114 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Psa4g4114 277 MobiDBLite consensus disorder prediction 233 270 - -
Psa4g4114 277 MobiDBLite consensus disorder prediction 30 56 - -
Psa4g4114 277 SUPERFAMILY RNA-binding domain, RBD 63 150 IPR035979 GO:0003676
Psa4g4114 277 MobiDBLite consensus disorder prediction 30 61 - -
Psa4g4114 277 Gene3D - 32 222 IPR012677 -
Psa4g4114 277 CDD RRM_ZCRB1 66 143 IPR034219 -
Psa4g4114 277 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Psa4g4114 277 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 275 IPR044598 GO:0000398|GO:0005689
Psa4g4114 277 SMART rrm1_1 68 141 IPR000504 GO:0003723
Psa4g4114 277 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Psa4g4114 277 MobiDBLite consensus disorder prediction 180 277 - -
Psa4g4114 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Psa4g4114 277 SUPERFAMILY Retrovirus zinc finger-like domains 155 181 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4114 Psa-Chr4 363466861 363467931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4114 66 129 Eukaryotic Initiation Factors Gene Family AT3G11400 43.750 1.55e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4114 K13154 - gmx:100814914 306.605