Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4102 ATGCCTTCAAAGAAAAAAAGTCAATGGAAAACCTTAGTACTTGGTTGTTTCAAAGACAAAAACCTTACCTTAGAATCACCAAAACTTGTTTCAAAAAAGCAAGGTTCAAGTAGAATCTCTCTTTCTGATTTAAGTGATTATTCATCTCCTTCTGTCATAAGTGATTTATCCAATTCATTAGTTGGAAATGTTCAAATCTTCACTTGCAAAGAACTCAAAGAGATCACAAACAACTTCAACAAATCGAATTTTCTCGGCGAAGGTGGATTCGGAAAGGTTTACAAAGGTTTCATTGATGATAAACTTAGGCCTGCACTTGTTCCTCCTCAACCTGTTGCTGTTAAAGCCTTGAATTTGGATGGAAAACAAGGTCATAGAGAGTGGTTGGCTGAAGTGCTGTTCTTGGGGCAGTTGAAGCATCGCAATCTTGTTAACTTAATTGGTTATTGCTATGAAGATGAGCATAGACTTCTTGTCTATGAATACATGGAAAGAGGAAGTTTAGAAGAAAAACTTTTCAAAGGTTATTTAGCAACTTTGCCTTGGTTAACAAGAATCAAAATAGCACTTGGTGCTGCTAAAGGACTAGCTTTTCTTCATGAAGAAGAGAAACCTGTTATTTATAGAGATGTTAAAGCCTCAAACATTCTATTGGATGCTGATTTCGTTGCTAAGTTGTCGGATTTTGGTTTAGCGATTGATGGACCGGATAAAGATCAGACTCATATCACGACTCGTGTGATGGGCACACATGGTTACGCCGCTCCTGAATACATCAATACAGGTCGTTTGACGACGATGAGCGATGTATATAGTTTCGGAGTAGTTCTCTTAGAGCTACTAACCGGAAAGAAATCAGTGGACAAAAAAAGACCATCAAGAGAACAAGATTTAGTAGAATGGGCGAGGCCATTATTGAAGGATTCACACAAACTCGAAAGAATAATCGATTCGCGACTCGAGGATCAATACTCGATCGAAGGAGCAAGAAAACTAGCCTCCTTAACCTATCAATGTCTAAGCCATCATGACAAAAGTAGACCAACAATGAGAACCGTTGTGAAAACCTTAGAGTCTCTCATGAAACTAAATGACATTCCAATTGGTCATTTTGTTTATGTGGCTCCTAATGAGGTGACAAATAGTGAAGTGTCACTAAATGTGAGTGACAAAAGTGTTGTGAAAGTTAAGGATGAAGAAAAGGAAGAGGGTCGAAGAATTCGTCGAAAAAGTCGTAGTAGTCGACGACGGATTAAGGCAATGATGAGGTCTGGTTCTGTTTACTCTGATACTGCTCTGTATAAGACTCTTGGAACTGGTTTGTATTCACCTAAGGAAAGCAAGGAGAAGCAATAA 1356 0.3842 MPSKKKSQWKTLVLGCFKDKNLTLESPKLVSKKQGSSRISLSDLSDYSSPSVISDLSNSLVGNVQIFTCKELKEITNNFNKSNFLGEGGFGKVYKGFIDDKLRPALVPPQPVAVKALNLDGKQGHREWLAEVLFLGQLKHRNLVNLIGYCYEDEHRLLVYEYMERGSLEEKLFKGYLATLPWLTRIKIALGAAKGLAFLHEEEKPVIYRDVKASNILLDADFVAKLSDFGLAIDGPDKDQTHITTRVMGTHGYAAPEYINTGRLTTMSDVYSFGVVLLELLTGKKSVDKKRPSREQDLVEWARPLLKDSHKLERIIDSRLEDQYSIEGARKLASLTYQCLSHHDKSRPTMRTVVKTLESLMKLNDIPIGHFVYVAPNEVTNSEVSLNVSDKSVVKVKDEEKEEGRRIRRKSRSSRRRIKAMMRSGSVYSDTALYKTLGTGLYSPKESKEKQ* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4102 451 SMART serkin_6 79 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4102 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Psa4g4102 451 Gene3D Phosphorylase Kinase; domain 1 52 162 - -
Psa4g4102 451 CDD STKc_IRAK 85 360 - -
Psa4g4102 451 ProSiteProfiles Protein kinase domain profile. 79 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4102 451 ProSitePatterns Protein kinases ATP-binding region signature. 85 115 IPR017441 GO:0005524
Psa4g4102 451 SUPERFAMILY Protein kinase-like (PK-like) 60 358 IPR011009 -
Psa4g4102 451 PANTHER BNAA02G16030D PROTEIN 29 416 - -
Psa4g4102 451 Pfam Protein tyrosine and serine/threonine kinase 82 357 IPR001245 GO:0004672|GO:0006468
Psa4g4102 451 Gene3D Transferase(Phosphotransferase) domain 1 163 368 - -
Psa4g4102 451 PANTHER OS01G0588500 PROTEIN-RELATED 29 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4102 Psa-Chr4 362710560 362713100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4102 64 371 Glycoside Hydrolase AT3G07070 48.882 5.91e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa4g4102 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4102 - - gmx:100790454 629.787