LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g4092	ATGAGACTCTGTTATTTGGATTCTGCAATTGTTATTATTACTCTTTGTTTCTTCTTCAGCTGTTTGTTTAGCTCTTCACAAGCTCAAACTGCAAACGCCACTACAGATCCTTCTGAAGCACAAGCTCTAAATTCAATATTTAGCAAATGGAAAATAAAAGCAGACGAAACTCAATGGAACATAAGCGGTGAGCTATGCAGTGGAAAAGCAATCGTTAGCAGTATCACTATTGATGACCAAACTTATGACCCATTCATCAAATGTGATTGTTCCTATAACAACCAAACTACTTGCCACATCACTGCATTGAAAGTTTATTCATTGGATGTCATCGCTGAAATTCCACCAGAGCTATGGACTCTCACGTACCTCACCAATTTGCAGATCAGCCAGAATTACTTGACCGGGTCTTTACCTCCGGCGATTGGAAATCTGACTCGTATGCAATACATGTCTATTGGCATCAATGCTTTGTCAGGAGAGCTTCCAAAGGAACTGGGAGATCTTACTGAATTGATTGTATTGGGTTTTGGGTCTAATAACTTCTCAGGATCTTTGCCATCTGAACTTGGAAATCTTGTAAAACTACAACAGCTCTACTTGGATAGTTCTGGAATAAGTGGTCCAATTCCACCAACATTTGCAAGCCTTTCGAGTTTGGCGACATTATGGGCTTCAGACACACAACTCACCGGGCGAATACCCGACTTCATAGGAAATTTTCCTAAGCTTCAATCCTTGAGATTTCAGGGTAATTCCTTCGAAGGTCCAATACCCTTGTCATTTTTCAATTTGACTTCTTTGACAGAATTGAGAATAAGTGGTCTATCAAATGGGAGCTCCTCATTGGATGCAATAAAGAACATGAAGTCTATCACAATCTTAGAATTGAGGAATAACAACATTTCTGGTTCAATTCCTTCCTTCATTGGAGAATTCCAAAATTTGACTCAGCTAGACTTAAGCTTCAATAACATCTCAGGACAAATTCCTGGATCAATTTTCAATTTGAGCTCCCTCTCTTCCTTGTTTCTTGGAAATAACACACTTAATGGTAGTCTCCCTTGGCAGAAAAGTTCATCTCTTAACAACATAGATTTGTCATACAATGATCTATCCGGAAGCTTCCCCTCTTGGATAAACGCACAAAATCTAGAACTGAACTTAGTAGCCAACAACTTGACAATAGATGATTCAAATAGCAGTGGTTTGCCTACTGGGCTAAACTGTCTCCAGAAAACTTTTCCATGCAATAGTGGCGCTGCAGCAAGATATTCTGACTTCGCGATCAAGTGCGGTGGTCCTCAAATTAGAAGTACAGATGGAATTGTGTATCAAACGGACAATGAGACACTCGGCCCTGCTACATACTTTGTTACTGATACAGAAAGATGGGCTGTTAGTAATGTTGGAATATTTACTGGGAGCAACAATCCTGTGTTCAAAAGTTCTGTGACTAATCAGTTCACTGGTACTTTGAACCCGGAGATTTTTCAAACTGCTCGGCTCTCTGCATCATCATTAAGATATTATGGTTTGGGGCTACAAAATGGTTTTTATAACATTACCCTCCAATTTGCGGAAACAGCTATTCTCGATTCTACGACATGGAAAAGCCTCGGGAGACGAGTATTTGATATTTATATCCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAGACAAGCCGGAGGTGTCTCTTATAGAGCTGTTCAAAAACAATTTAGGTTTGAAGTGAAAGAAAACTATGTCGAGATCCATCTTTTTTGGGCCGGAAAAGGGACTTGTTGCATACCTGGCCAAGGTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTACACCAGATTTCATACCTACTGTCAGCAACAAACCTCCCAGCAGTAAAAAGAATAGAGCAGGTCTAATCGTTGGAATTGTCGTTGGTGTTGGAGTTGTATGCTTTCTATCAATTTTCGCCATTTTCTATATCATTCGGAGAAGAAAACGCTATGATGATGATGATGAGCTTTTAGGCATTGATACAATGCCAAACACTTTCAGCTACTACGAGTTAAAAAATGCTACAAGTGACTTCAACCGTGACAATAAGCTTGGAGAAGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGATGTGGCTGTCAAACAATTATCTATAGGATCCCATCAAGGAAAGAGTCAGTTTGTAGCTGAGATTGCTACTATATCTGCTGTGCAGCACCGTAATCTTGTCAAATTATATGGATGTTGTATTGAAGGGAGTAAAAGACTTCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGTTTTATTCCTCAATTGGCCGACCCGCTATGATATTTGTATGGGTGTTGCAAGAGGTTTGACATATTTACACGAGGAGTCACGGCTTCGTATTGTGCACCGGGATGTGAAGGCTAGTAATATTCTACTCGATTCTGAACTTATCCCAAAAATATCCGACTTTGGGTTGGCCAAATTATACGATGATAAAAAAACCCATATAAGCACCCGCGTTGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAGGCCGATGTTTTTTCCTTTGGCGTTGTAGTTCTCGAGTTAGTCAGTGGGAGGCCAAATTCGGATTCAACTTTGGAAGGCGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAGGAACTGTACAAACGATCTGATCGATCCTAGACTATCAGAATTCAACAAAGAAGAAGTTCAACGCCTCGTGGGAATAGCACTTTTGTGCACTCAAACATCACCAACTTTACGGCCACCGATGTCACGAGTAGTGGCAATGCTTTCCGGAGATATTGAAGTGAGCGCTGTAACATCAAGGCCCGGATACCTAACTGACTGGAAATTTGACGATGTGAGCAGCATCATGACCAACATTTCATCTAAGGGATTAGATACAAGTAATTACAATTCAACAGCAAGTACAAGCACTGCTGTTGGAGCAGATCAATATTCACCGAAAGGTTCTTCTAAACCCATCCTTCGTGAGACTCTTAGAGAGGGTAGGTAA	3105	0.4071	MRLCYLDSAIVIITLCFFFSCLFSSSQAQTANATTDPSEAQALNSIFSKWKIKADETQWNISGELCSGKAIVSSITIDDQTYDPFIKCDCSYNNQTTCHITALKVYSLDVIAEIPPELWTLTYLTNLQISQNYLTGSLPPAIGNLTRMQYMSIGINALSGELPKELGDLTELIVLGFGSNNFSGSLPSELGNLVKLQQLYLDSSGISGPIPPTFASLSSLATLWASDTQLTGRIPDFIGNFPKLQSLRFQGNSFEGPIPLSFFNLTSLTELRISGLSNGSSSLDAIKNMKSITILELRNNNISGSIPSFIGEFQNLTQLDLSFNNISGQIPGSIFNLSSLSSLFLGNNTLNGSLPWQKSSSLNNIDLSYNDLSGSFPSWINAQNLELNLVANNLTIDDSNSSGLPTGLNCLQKTFPCNSGAAARYSDFAIKCGGPQIRSTDGIVYQTDNETLGPATYFVTDTERWAVSNVGIFTGSNNPVFKSSVTNQFTGTLNPEIFQTARLSASSLRYYGLGLQNGFYNITLQFAETAILDSTTWKSLGRRVFDIYIQGTRVLKDFDIQRQAGGVSYRAVQKQFRFEVKENYVEIHLFWAGKGTCCIPGQGTYGPLIQAISATPDFIPTVSNKPPSSKKNRAGLIVGIVVGVGVVCFLSIFAIFYIIRRRKRYDDDDELLGIDTMPNTFSYYELKNATSDFNRDNKLGEGGFGPVYKGTLNDGRDVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNVLFLNWPTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSELIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVVLELVSGRPNSDSTLEGEKMYLLEWAWQLHERNCTNDLIDPRLSEFNKEEVQRLVGIALLCTQTSPTLRPPMSRVVAMLSGDIEVSAVTSRPGYLTDWKFDDVSSIMTNISSKGLDTSNYNSTASTSTAVGADQYSPKGSSKPILRETLREGR*	1035

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g4092	1034	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	104	1013	-	-
	Psa4g4092	1034	ProSiteProfiles	Leucine-rich repeat profile.	315	337	IPR001611	GO:0005515
	Psa4g4092	1034	Gene3D	Ribonuclease Inhibitor	279	402	IPR032675	-
	Psa4g4092	1034	SUPERFAMILY	Protein kinase-like (PK-like)	676	980	IPR011009	-
	Psa4g4092	1034	ProSiteProfiles	Protein kinase domain profile.	693	966	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa4g4092	1034	Pfam	Malectin domain	427	612	IPR021720	-
	Psa4g4092	1034	SMART	serkin_6	693	960	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa4g4092	1034	Pfam	Protein tyrosine and serine/threonine kinase	696	960	IPR001245	GO:0004672\|GO:0006468
	Psa4g4092	1034	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	21	-	-
	Psa4g4092	1034	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	812	824	IPR008271	GO:0004672\|GO:0006468
	Psa4g4092	1034	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	104	1013	-	-
	Psa4g4092	1034	Pfam	Leucine rich repeat	291	350	IPR001611	GO:0005515
	Psa4g4092	1034	MobiDBLite	consensus disorder prediction	1008	1034	-	-
	Psa4g4092	1034	SUPERFAMILY	L domain-like	98	395	-	-
	Psa4g4092	1034	Gene3D	Ribonuclease Inhibitor	36	278	IPR032675	-
	Psa4g4092	1034	CDD	STKc_IRAK	699	960	-	-
	Psa4g4092	1034	Gene3D	Transferase(Phosphotransferase) domain 1	769	971	-	-
	Psa4g4092	1034	Gene3D	-	427	616	-	-
	Psa4g4092	1034	Gene3D	Phosphorylase Kinase; domain 1	666	768	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g4092	Psa-Chr4	361470572	361487058	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g4092	105	278	Receptor kinase-like Gene Family	AT1G56120	27.586	1.91e-11	66.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Psa4g4092		PK_Tyr_Ser-Thr	1.9e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g4092	-		-	mtr:MTR_8g445800	1618.98