Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4083 ATGACATGCAGCAATTATTTTTCTCAGCAACAGCGAACCTTCATACAGATGAGGACTGTTCTGAAGGTTGTGGACAACTCTGGAGCTAAAAAGGTGATGTGCATACACGCGTTGAAAGGGAAGAAAGGAGCAAGATTAGGTGATATGATAAAAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAGGGATCAACTGTATTTGCCGTAGTTGTTCGTGCAGCAATGCCCAAGGGGAGGTGTGATGGCAGTGAGGTCAAGTTTGACGACAATGCTGTCGTCCTTGTTGACAAACAAGGGCAGCCTATTGGGACCAGAGTTTTCGGACCAGTTCCTCATGAGTTGAGGCAGAAGAAGCATGTCAAAATCCTTACCTTAGCGGGGCATATTGCATAG 402 0.4552 MTCSNYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIHALKGKKGARLGDMIKASVKEAHPNGKVKKGSTVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4083 133 Hamap 50S ribosomal protein L14 [rplN]. 14 133 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa4g4083 133 SMART Ribosomal_L14_2 14 133 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa4g4083 133 SUPERFAMILY Ribosomal protein L14 15 132 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa4g4083 133 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 2 133 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa4g4083 133 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE 2 133 - -
Psa4g4083 133 ProSitePatterns Ribosomal protein L14 signature. 71 97 IPR019972 -
Psa4g4083 133 TIGRFAM rplN_bact: ribosomal protein uL14 15 132 IPR005745 GO:0003735|GO:0006412|GO:0015934
Psa4g4083 133 Gene3D Ribosomal protein L14 14 133 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa4g4083 133 Pfam Ribosomal protein L14p/L23e 15 132 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4083 Psa-Chr4 360001067 360003316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4083 25 116 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 38.384 9.45e-11 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4083 K02874 - gmx:100818301 245.743