Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4074 ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACAGCGATGAAGACGACGACGTTTTCTACTACCGCTACTGCGCTTCGTCCTCAACCCCCAACACCACCACCGGCACCACATCCAGTAATCAACCCCAATCAAAACCGAACAACAAAGGATCATCAATAGGAGGAACAGGTGAACCCTTAGCACCATCAAAATCGACGCTATACGTTTCTAATCTAGATTACTCCCTAACAAACTCCGATCTCCATACGCTCTTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCACACGCGCCTAAGCCGCGGTGTCGCGTTTGTCCAATTCGTTTCTCGTAATGACGCCCAACGCGCCGTGGCGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTAACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAAGCGCTTGGGGCCGAGGCCGCGACCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGTCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGAGGGTGGTCAGATTGCTGCGGAGCAGTTTGACGATAATTGGGCTTCTGTTGTTGATGATGATGTAGGTGAAAGGTTGCTGGGGAGAAACAGAAATGATGATGAGGGTTTGGACAACAACAAGACGAAGAAGAAAGGGAAGAAAGCTGGGTATTTCAGTGATGAGAGCGATCATGATGATGATGATTGA 756 0.5 MSSKKKHKRKHSDSDEDDDVFYYRYCASSSTPNTTTGTTSSNQPQSKPNNKGSSIGGTGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRNDAQRAVAEMNKKILNGRTLTASIAADNGRAPEFIRKRLGPRPRPQPKKPRRGFSGLRDRDGEEEGDEEEEEGGQIAAEQFDDNWASVVDDDVGERLLGRNRNDDEGLDNNKTKKKGKKAGYFSDESDHDDDD* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4074 251 MobiDBLite consensus disorder prediction 207 244 - -
Psa4g4074 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Psa4g4074 251 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 155 249 IPR044598 GO:0000398|GO:0005689
Psa4g4074 251 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 156 IPR044598 GO:0000398|GO:0005689
Psa4g4074 251 MobiDBLite consensus disorder prediction 30 56 - -
Psa4g4074 251 MobiDBLite consensus disorder prediction 30 61 - -
Psa4g4074 251 CDD RRM_ZCRB1 66 143 IPR034219 -
Psa4g4074 251 Gene3D - 31 196 IPR012677 -
Psa4g4074 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Psa4g4074 251 MobiDBLite consensus disorder prediction 180 195 - -
Psa4g4074 251 SMART rrm1_1 68 141 IPR000504 GO:0003723
Psa4g4074 251 SUPERFAMILY RNA-binding domain, RBD 63 173 IPR035979 GO:0003676
Psa4g4074 251 MobiDBLite consensus disorder prediction 149 251 - -
Psa4g4074 251 SMART rrm2_1 68 141 IPR003954 GO:0003676
Psa4g4074 251 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 155 249 - -
Psa4g4074 251 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4074 Psa-Chr4 358947462 358948621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4074 66 129 Eukaryotic Initiation Factors Gene Family AT3G11400 45.312 1.63e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4074 K13154 - gmx:100814914 233.032