Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4069 ATGTCTCACAACCACCACCCAACAAGAACACCACCTGGGTCTGTGATCGATCAACCTCTTCTCTTTGATTCTCGTATCACCAACAATGTTCCAACAAGATTAATGTCTCACAACCACAACAGTGTTTCATCAAGATTAACTTCACCAACAGTGTCTGTGGTAGATGAAACTGTTCTCTATGACTTTCCTATCGGCAATGTTCCAAGAAGATCAAGGATTCATCATCAAACGGGTCATCCCCACCACAACCACCACCACCACCACAATGGTACTCGAGCTTCTCCGGCGGTGATGGGTGTTCAAAATACTAGAGCTTCTGGTGCTCAAGATACTTGTCAACATGTCACAACATCAACAACAGATGCTCAATCCATTTGTTGCATTTGTCTTGTTAACTTGTCTAATGGTTCTTCCATGCCAATTCGGCTGCGCTGCTCTCATGATTTTCATACCGACTGCATTCAAAAATGGATCAACATTAAGAAAACTTGTCCACTTTGTCGCGCCAATGTTTAA 516 0.4302 MSHNHHPTRTPPGSVIDQPLLFDSRITNNVPTRLMSHNHNSVSSRLTSPTVSVVDETVLYDFPIGNVPRRSRIHHQTGHPHHNHHHHHNGTRASPAVMGVQNTRASGAQDTCQHVTTSTTDAQSICCICLVNLSNGSSMPIRLRCSHDFHTDCIQKWINIKKTCPLCRANV* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4069 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 24 171 IPR045191 GO:0061630
Psa4g4069 171 SMART ring_2 126 167 IPR001841 -
Psa4g4069 171 Pfam Ring finger domain 126 168 IPR001841 -
Psa4g4069 171 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Psa4g4069 171 PANTHER OS05G0163400 PROTEIN 24 171 - -
Psa4g4069 171 SUPERFAMILY RING/U-box 125 171 - -
Psa4g4069 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 171 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4069 Psa-Chr4 358203611 358207384 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4069 112 171 C3H Transcription Factor Family AT1G74620 38.333 3.89e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4069 - K19041 gmx:102660969 69.3218