Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4047 ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACAGCGATGAAGACGACGACGTTTTCTACTACCGCTACTGCGCTTCGTCCTCAACCCCCAACACCACCACCGGCGCCACATCCAGATCATCAATAGGAGGAACAGGTGAACCCTTAGCACCATCAAAATCGACGCTATACGTTTCTAATCTAGATTACTCCCTAACAAACTCCGATCTCCATGCGCTCTTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCACACGCGCCTAAGTCGCGGTGTCGCGTTTGTCCAATTCGTTTCTCGTAATGACGCCCAACGCGCCGTGGCGGAGATGAATAAGAAGATTCTCAATCGAAGGACTCTAACTGCTTTTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAAGCGTGTGTACAATACTGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGTCGAGGCCGCGGCCTAAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGAGGGTGGTCAGATTGCTGCGGAGCAGTTTGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAG 686 0.5146 MSSKKKHKRKHSDSDEDDDVFYYRYCASSSTPNTTTGATSRSSIGGTGEPLAPSKSTLYVSNLDYSLTNSDLHALFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRNDAQRAVAEMNKKILNRRTLTAFIAADNGRAPEFIRKRVYNTETALCYECGGHGHLSYECPKNQLGSRPRPKPKKPRRGFSGLRDRDGEEEGDEEEEEGGQIAAEQFDDNWASVVDDEAGE 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4047 228 MobiDBLite consensus disorder prediction 195 210 - -
Psa4g4047 228 SMART rrm1_1 57 130 IPR000504 GO:0003723
Psa4g4047 228 SUPERFAMILY Retrovirus zinc finger-like domains 144 170 IPR036875 GO:0003676|GO:0008270
Psa4g4047 228 MobiDBLite consensus disorder prediction 169 228 - -
Psa4g4047 228 SMART c2hcfinal6 153 169 IPR001878 GO:0003676|GO:0008270
Psa4g4047 228 ProSiteProfiles Zinc finger CCHC-type profile. 154 169 IPR001878 GO:0003676|GO:0008270
Psa4g4047 228 SUPERFAMILY RNA-binding domain, RBD 52 139 IPR035979 GO:0003676
Psa4g4047 228 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 227 - -
Psa4g4047 228 Pfam Zinc knuckle 154 169 IPR001878 GO:0003676|GO:0008270
Psa4g4047 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 134 IPR000504 GO:0003723
Psa4g4047 228 Gene3D - 1 140 IPR012677 -
Psa4g4047 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 127 IPR000504 GO:0003723
Psa4g4047 228 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 227 IPR044598 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4047 Psa-Chr4 354168537 354169255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4047 55 118 Eukaryotic Initiation Factors Gene Family AT3G11400 45.312 6.55e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4047 K13154 - gmx:100814914 254.603