Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4031 ATGGATGAACAATTAAACCCAGGAGAGCTGGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAGCCTCCAGATAATGTACTATTTGTGTGTAAATTGAATCCGGTGACCGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCAAAATAGTGGTGACAGTTTATGCTATGCTTTTATAGAGTTTGATGACAAACAGGCATGTGAGCAGGCATATTTCAAGATGGATAATGCTTTGATTGACGATCGAAGAATACATGTAGATTTTAGTCAAAGTGTTGCAAAACTGTGGTCACAATACAACAGGAAAGATAGTAAGGCTGGTGGTTGCTTCAAATGTGGTTCCACAGATCATATTGCCAAGGATTGCACTGGAGATGCTACAGTGAAACAACCCACAAAATATATCTTGAAGGACAACAATGCCCAACGTGGTGGGCAGAATGCGAGATATGAAATGGTTTTTGATGGAGATAACACGAAAAGTCCAAGGAGAGAAATGAAACACCAAAGACATAACAAAGATGACCGAGATGATAGAAGAGACAGGAAAGAAATTTTTAAAGATGATAGTCACAGAGGCCACAGAGATCAGGAGATGGCAGGCTCAAATAACAAAGATAGGTATGGCGATAGAGGCAGAGGGCTTAAAGGAAATGAAGATGATAAAGCACGAAGAGGTGCAAGAGATACAGGTTTGCAGGATGACAAGAAAGACAGAGAAAGGCACGTGGGAAGACAGAGAGATGATGAATATCGACGAAAAGATGAGCTAGACTCGAGAAAAAGAGACTTAGGTTATAGCTTCACAGAAAGACGGGCTAGTCGAGATGAAAGGAGAAAAACTGATGGTAGCCATTTGGTTAGGAAGAATGACAGAGATTATAGGAAGAGAACTGAAGACAGTGGAAGGCCAGATGTGAAGAATGATTCTGGACGAAGAAAACGAAGCCCAGATGATGGGGATTACAAACATAGCAGAAATGATGAGGATTGCAGAGAAAATGTGAAGATTGCTTCAGGACGAAGAAAACGAAGCCCGGATGATGGTGATTACAAACATAGGAGGGAAGATCGGGGACATAGAAGACGTGATACCGAACCTGATGAATATCCTCATCCTCATAGAAGGCATCATGCGACAAAAGATGATTGTTGA 1242 0.4147 MDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDQNSGDSLCYAFIEFDDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYNRKDSKAGGCFKCGSTDHIAKDCTGDATVKQPTKYILKDNNAQRGGQNARYEMVFDGDNTKSPRREMKHQRHNKDDRDDRRDRKEIFKDDSHRGHRDQEMAGSNNKDRYGDRGRGLKGNEDDKARRGARDTGLQDDKKDRERHVGRQRDDEYRRKDELDSRKRDLGYSFTERRASRDERRKTDGSHLVRKNDRDYRKRTEDSGRPDVKNDSGRRKRSPDDGDYKHSRNDEDCRENVKIASGRRKRSPDDGDYKHRREDRGHRRRDTEPDEYPHPHRRHHATKDDC* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4031 413 CDD RRM_PPIL4 39 121 - -
Psa4g4031 413 Gene3D - 8 124 IPR012677 -
Psa4g4031 413 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 289 IPR035542 -
Psa4g4031 413 SUPERFAMILY RNA-binding domain, RBD 28 131 IPR035979 GO:0003676
Psa4g4031 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Psa4g4031 413 Pfam Zinc knuckle 137 152 IPR001878 GO:0003676|GO:0008270
Psa4g4031 413 ProSiteProfiles Zinc finger CCHC-type profile. 138 151 IPR001878 GO:0003676|GO:0008270
Psa4g4031 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Psa4g4031 413 SMART rrm1_1 43 116 IPR000504 GO:0003723
Psa4g4031 413 MobiDBLite consensus disorder prediction 183 413 - -
Psa4g4031 413 SUPERFAMILY Retrovirus zinc finger-like domains 124 153 IPR036875 GO:0003676|GO:0008270
Psa4g4031 413 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Psa4g4031 413 MobiDBLite consensus disorder prediction 185 413 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4031 44 119 Eukaryotic Initiation Factors Gene Family AT4G34110 34.211 1.40e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4031 K12735 - gmx:100776900 563.148