Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4028 ATGTCCGAAGCTCCGGCGAGTCCTGGCGGTGGAAGCCACGAAAGCGGCGAACATAGTCCTCGTTCTAACATCCGTGAGCAAGATAGGTTTCTTCCTATCGCCAACATTAGCCGCATCATGAAGAAAGCTCTCCCTGCTAATGGCAAAATCGCGAAAGATGCTAAAGAGACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACTATTAACGGCGATGATTTGCTTTGGGCGATGGCTACTCTAGGTTTTGAGGATTATATTGATCCTCTTAAGATTTACCTTACAAGATACAGAGAGAGTTATTTTGAAGTTTTATTGCTGTTGTGCTTTTTACTGATGGTAATTTTTTCATTGCTTTGCCGTGGGTTGGTTCGATTGGAAATGTTTCAGATGGAGGGTGATACAAAGGGCTCTGGCAAGGGTGGAGACTCGTCTGCTAAGAAAGATCTTCAGCAAGGTTCTAATTCTCAGCTTGTTCATCAAGGTTCTTTCTCACAAGGTGTTTCTTACACAAATTCTCAGGTAACACTACTCTCTTAA 588 0.4439 MSEAPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRESYFEVLLLLCFLLMVIFSLLCRGLVRLEMFQMEGDTKGSGKGGDSSAKKDLQQGSNSQLVHQGSFSQGVSYTNSQVTLLS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4028 195 MobiDBLite consensus disorder prediction 1 24 - -
Psa4g4028 195 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8 2 192 - -
Psa4g4028 195 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Psa4g4028 195 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Psa4g4028 195 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Psa4g4028 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 192 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa4g4028 195 Gene3D Histone, subunit A 17 177 IPR009072 GO:0046982
Psa4g4028 195 SUPERFAMILY Histone-fold 27 116 IPR009072 GO:0046982
Psa4g4028 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Psa4g4028 195 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4028 Psa-Chr4 347717746 347718769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4028 1 191 CCAAT-HAP3 Transcription Factor Family AT2G37060 64.646 1.65e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa4g4028 CBFD_NFYB_HMF 1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4028 K08065 - gmx:100798667 259.61