Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4026 ATGGAACTATTCTCAACTAATCTCAAGGTCCTTGTCATTCATCATGACACTATTGTTCTTAATGAAATTCAAGAAATGTGTGATAGATATCATTATGTAGTAACCAAATGCACTTCAGCTTCTTATGCTTTTAATCTTCTCGTGGAAAGGTGTGGTTATTTTGATATGATGCTGATTGATGTTTGTATGCCAAACATGGATTCTTATAGCTTTGTTCAATATGTAACCCTACAACACAAAATCCCTGTCATTGTGATTTCTTCTGATGCGACAAAAAGTTCTGTCCTAAAGTCTATAATTCATGGCGCCTGTGATTATTGGGTTCAACCTTTGCATGAAAAACAATTCAAGACCATGTGGCAACACGTTGCCAGAAAAACTTTGATGGAGAATAAAGAAGATGAAGATCTTGGATTCTTGAATGCGCAACTCCATAAAGAACCTGAACTTGTTGAAATCTTGGAGACTGATAGTCATAAAGAACATCAAGATCTTGGATTCTTGAAGTTTCGAAGTGCTAAAGAACCTGAACTTGTTGAAATCTTGGAGACTGAAATTCATAAAGAACATCAAAATCTTGGATTCTTGGAACCACAGAGCCATCAAGAACATGAAGTTGTTGAAATCATGGAGGGTCCTCGGCATGAAAGAAAACGGGAGAGAGAAGATGATAAACCTGGAAAAGAAAGAGGTGCAAAAAAGAGTCGGCTATCATGGACGCCGCAACTGCATCAACAGTTTGTAAATGCTGTGAACCAACTTGGCTTAGATGAGGCAAAACCTAGAAAGATTCTCAAAATTATGGGTGTTTCTGGTTTAGCAACAGCACAGGTTGCAAGTCATTTGCAGAAGTATAGAAATTATTTGAAGAGACCAAAGTCAAAGAAAAGTCCAACTGAGTGTCTTGATAAAACATGGTTAGAATCTGAATATGCTAACTCAATGATAGAACAAGACCAAAGTCCTCAACTGAATTCAACTCTTCAAACTGATAATATCTATGAAACACAACAGCATTCGACTGATGTTACTACTAACTATCATCAAGTTTCCGACATTGGCTGCAATTATGAAACACAAAAGCTTTCAACTGGTTTTGGCGATTATCAAGTCTCCGACATTATGAACGATTTTCCTGATTCAACCCAATCAATGTTACAACAGGACCTAAATTCAACTCTTCAAAGTGATAACAATTATGAAACACAACAACATCCAACAGATGTCGGCGATTATCGAGTCTCCGACATTATGAACAACGATTTTCCTGATCCATCTGACTTGCTCTTTGATTTAGATGATGACTTAATATCATTATTATTTTAA 1326 0.3643 MELFSTNLKVLVIHHDTIVLNEIQEMCDRYHYVVTKCTSASYAFNLLVERCGYFDMMLIDVCMPNMDSYSFVQYVTLQHKIPVIVISSDATKSSVLKSIIHGACDYWVQPLHEKQFKTMWQHVARKTLMENKEDEDLGFLNAQLHKEPELVEILETDSHKEHQDLGFLKFRSAKEPELVEILETEIHKEHQNLGFLEPQSHQEHEVVEIMEGPRHERKREREDDKPGKERGAKKSRLSWTPQLHQQFVNAVNQLGLDEAKPRKILKIMGVSGLATAQVASHLQKYRNYLKRPKSKKSPTECLDKTWLESEYANSMIEQDQSPQLNSTLQTDNIYETQQHSTDVTTNYHQVSDIGCNYETQKLSTGFGDYQVSDIMNDFPDSTQSMLQQDLNSTLQSDNNYETQQHPTDVGDYRVSDIMNNDFPDPSDLLFDLDDDLISLLF* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4026 441 Gene3D - 231 291 - -
Psa4g4026 441 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Psa4g4026 441 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 6 404 - -
Psa4g4026 441 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 234 287 IPR006447 GO:0003677
Psa4g4026 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 290 IPR017930 -
Psa4g4026 441 MobiDBLite consensus disorder prediction 208 235 - -
Psa4g4026 441 Pfam Response regulator receiver domain 10 118 IPR001789 GO:0000160
Psa4g4026 441 MobiDBLite consensus disorder prediction 208 237 - -
Psa4g4026 441 Pfam Myb-like DNA-binding domain 237 286 IPR001005 -
Psa4g4026 441 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 404 IPR045279 GO:0009736
Psa4g4026 441 CDD REC_typeB_ARR-like 10 124 - -
Psa4g4026 441 Gene3D - 3 133 - -
Psa4g4026 441 SUPERFAMILY Homeodomain-like 232 291 IPR009057 -
Psa4g4026 441 SUPERFAMILY CheY-like 7 133 IPR011006 -
Psa4g4026 441 SMART REC_2 8 120 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4026 Psa-Chr4 347664853 347666493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4026 43 291 Response Regulator Gene Family AT3G16857 35.341 4.73e-37 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa4g4026 Response_reg 1.8e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4026 - K14491 cam:101491966 221.861