Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3986 ATGTGTTGTGGAGACAGTTTGCATTTGTCAGAATCCAAGTGTAAGTCATGCAACCATGTAACAACAAGTGATGATGTGGAAGAATGGGTATACCACCAACTAGAGAACACAAGTCATCTTTTACATGGTGTAGTCCATGCAAATGGTTATGGGCACCTTCTCCGGGTCAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTTAGAAAAGTTAGTGTGATGGACGTTTCAAAGAAATATGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGAGACATCCGTGGTATGGTGAGTGGGGATATAATTTTGGCTCTGGTAGCTATTGTCTCACAAAGGAAGCATATAAGTCTGCTGTTGACAACCTATCCAATCTACCCCTGTCCATCTTTCTCTCCCAGGAACAAAAGCCCCACTCACGTGTGCAGGATATGATCTTGTATTACCAGTCTTTGTCAGAGCACGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTAATGGGTTTGATGCACGGTGCTCGCAAGAATGCCTCTAAGTCTGATGACATAACCTGCAAGAAGCGTCGGTTTGATGCTTCTGGATTATCAAGTTCTTGGGGGAAGAGTGACATTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCCGCCGTGCTCTTAGGGGCGCTGTTTGCAAGGTGGCTTCTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTAGGAGGGAAAGTGGTGTATGGTGGTGTTGTTAACAGCAGATGCAATCCTCAAACTGGAGTTGATGAATTCAGAATTGATGCGACAAGCTTCGATGGATTTATGGCCAGCAATAATTCTTCAGGCTCAAAGTTCCCATCTGAAGAAAATCTCCTGCAATGCTTGAGATATTTATACGAGTCATTGCTTCATCCTCGGATGATGCTAAACTATGTTGATGAAGAGACAAGAATGCTTGCAATGAGCTCAGCTCAGAAGCTTCTTGACTGCAAGCAATTAATAAAAGATTATTGTACTGAGATGTTGCCAGTGTCAGATTTGTATAAGATACGCATCTCATGTCAGGTTGAGCTAGTTGATCAACCAGAAGATCCCGCAGCTAGAACTCCTCCTGAAATTGTTGTGCTGCCCACAAATGCGACAGTATCTGACCTTAAGATTGAAGCAGCAAATGTTTTTCAAGATGTATATCTAATGTTTAGAAGATTTCAAGTTGACGAACTACTTGGCTACAGCGGTGTAGACGATTCCACCCAGGTCAAGCACTTGTTAAAACCAAATGAAGTGGTTTGTATCCGAGGAAGATGCTCCGGGAAGAATGGGTTGAGCAAGTTTAGAATGGAACGTGGACTTGAGAGGTGGACTGTGGAGTGCAGCTGTGGGGCTAAGGATGATGATGGAGAGAGAATGATGGCTTGTGATACATGTGGAGTATGGCGGCACACCAGGTGTTCTGGCATTCCTGATACTGCTCCTGTTCCAGCACGTTTTGTTTGCCAGAGATGCCAAAATTGTGACTCAAAACCTATATCTGTTGGACACTTAAAAGATGAGACTGTGACTAGTGTTAGTACCTCTAGAAGTAGTTGCTTTGGCAATGGTGTGCCAGTGCTTTCTGATGTTCGTTAG 1704 0.4419 MCCGDSLHLSESKCKSCNHVTTSDDVEEWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKRHPWYGEWGYNFGSGSYCLTKEAYKSAVDNLSNLPLSIFLSQEQKPHSRVQDMILYYQSLSEHELVNMRDLFCFLMGLMHGARKNASKSDDITCKKRRFDASGLSSSWGKSDIERVEEAMLRVLRAVSGSNWVSRRALRGAVCKVASPELLDYCLAELGGKVVYGGVVNSRCNPQTGVDEFRIDATSFDGFMASNNSSGSKFPSEENLLQCLRYLYESLLHPRMMLNYVDEETRMLAMSSAQKLLDCKQLIKDYCTEMLPVSDLYKIRISCQVELVDQPEDPAARTPPEIVVLPTNATVSDLKIEAANVFQDVYLMFRRFQVDELLGYSGVDDSTQVKHLLKPNEVVCIRGRCSGKNGLSKFRMERGLERWTVECSCGAKDDDGERMMACDTCGVWRHTRCSGIPDTAPVPARFVCQRCQNCDSKPISVGHLKDETVTSVSTSRSSCFGNGVPVLSDVR* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3986 567 PANTHER OS01G0877500 PROTEIN 1 533 - -
Psa4g3986 567 SMART PHD_3 482 528 IPR001965 -
Psa4g3986 567 ProSitePatterns Uncharacterized protein family UPF0054 signature. 42 52 IPR020549 -
Psa4g3986 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 533 IPR013083 -
Psa4g3986 567 SUPERFAMILY FYVE/PHD zinc finger 471 529 IPR011011 -
Psa4g3986 567 CDD PHD_MMD1_like 482 527 - -
Psa4g3986 567 Pfam PHD-finger 483 530 IPR019787 -
Psa4g3986 567 ProSiteProfiles Zinc finger PHD-type profile. 480 530 IPR019787 -
Psa4g3986 567 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3986 Psa-Chr4 341226193 341231139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3986 32 527 PHD Transcription Factor Family AT5G22260 30.394 4.49e-74 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa4g3986 PHD 1.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3986 - - mtr:MTR_1g076990 1016.53