Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3980 ATGGCTTTCTTTCCATCAAATTTCATGCTTCAAACTTCTCATCAAGATGACCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGCGCACCTCAAGATTACCATGGAGGAGTATCCTTTTTGGGAAAGAGATCTATGTCGTTTTCCGGGATAGAACTCGGAGAAGAAGCGAATGTGGAAGAAGAATTATCGGACGACGGATCGCAGTTAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACCCTTGAGAAAAGCTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTTGCAAGGGCTCTTGGACTTCAACCAAGACAAATTGCTATATGGTTTCAAAACAGAAGGGCTAGATGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTTAAAAGACAATATGATTCTGTTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAGAAGCTTCAGTCAGAGATATTGGCACTGAAAAATAGAGAACCAACAGAATCAATCAACCTAAACAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGAAATCAAGTTGGATATTTCAACAAGGACGACACAAACAGCTATTGATAGTCCTTTATCCACTCAACAACAAACAAGCATAAACCTCTTTCCATCTTCTTCTAGACCAACACTAGTTCCTCATCAACTCTTTCAAACCAATTCGACAAGACAAGACATTAATCAGTGCCAAAAGATTGATCACATGGTTAAAGAAGAGAGTTTGAGTAACATGTTTTCTGCCATTGATGATCAATCTGGATTATGGCCATGGTTGGAGCAACAACACTTCAATTGA 861 0.3961 MAFFPSNFMLQTSHQDDHHQPPPSLNSIITSCAPQDYHGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDSVKADNDALQAQNQKLQSEILALKNREPTESINLNKETEGSSSNRSENSSEIKLDISTRTTQTAIDSPLSTQQQTSINLFPSSSRPTLVPHQLFQTNSTRQDINQCQKIDHMVKEESLSNMFSAIDDQSGLWPWLEQQHFN* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3980 286 CDD homeodomain 76 132 IPR001356 GO:0003677
Psa4g3980 286 Coils Coil 123 171 - -
Psa4g3980 286 Gene3D - 68 137 - -
Psa4g3980 286 MobiDBLite consensus disorder prediction 172 203 - -
Psa4g3980 286 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Psa4g3980 286 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Psa4g3980 286 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Psa4g3980 286 SMART HOX_1 74 135 IPR001356 GO:0003677
Psa4g3980 286 MobiDBLite consensus disorder prediction 179 203 - -
Psa4g3980 286 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Psa4g3980 286 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Psa4g3980 286 SUPERFAMILY Homeodomain-like 70 133 IPR009057 -
Psa4g3980 286 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Psa4g3980 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 286 IPR045224 GO:0003700
Psa4g3980 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3980 Psa-Chr4 338499972 338503095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3980 1 286 Homeobox Transcription Factor Family AT1G69780 62.876 3.33e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g3980 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3980 K09338 - gmx:100801479 469.544