Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3979 ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACAGCGATGAAGACGACGACGTTTTCTACTACCGCTACTGCGCTTCATCCTCAACCCCCAACACCACAACCGACACCACATCCAGTAATCAACCCCAATCAAAACCGAACAACAAAGGATCATCAATAGGAGCAACAGGTGAACCCTTAGCACCATCAAAATCGACGCTATACGTTTCTAATCTAGATTACTCCCTAACAAACTCCGATCTCCATACGCTCCTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCACACGCGCCTAAGCTGCGGTGTCGCATTTCTCCAATTCGTTTCTCGTTATGACGCCCAACGCGCCGTGGCGCAGATGAATAAGAAGATTCTCAATGGAAGGACACTAACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAAGCGCGTGTACAATAATGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGGCCTCAGTCTAAGAAGCCGGGATGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAATGTGATGATGATGAGGAGGAGCGTGGTCAGATTGCTGCGGAGCAGTTTGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAGGTTGCTGGGGAGAAACAGAAATGATGATGAGGGTTCGGACAACAACAAGACGAAGAAGAAAGGGAAGAAAGCTGGGTATTTCAGTGATGAGAGTGATCATGATGATGATGATTGA 834 0.4892 MSSKKKHKRKHSDSDEDDDVFYYRYCASSSTPNTTTDTTSSNQPQSKPNNKGSSIGATGEPLAPSKSTLYVSNLDYSLTNSDLHTLLSTFGRIARVTVLKDRHTRLSCGVAFLQFVSRYDAQRAVAQMNKKILNGRTLTASIAADNGRAPEFIRKRVYNNETALCYECGGHGHLSYECPKNQLGPRPRPQSKKPGWGFSGLRDRDGEEECDDDEEERGQIAAEQFDDNWASVVDDEAGERLLGRNRNDDEGSDNNKTKKKGKKAGYFSDESDHDDDD* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3979 277 Gene3D - 1 151 IPR012677 -
Psa4g3979 277 MobiDBLite consensus disorder prediction 206 220 - -
Psa4g3979 277 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676|GO:0008270
Psa4g3979 277 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 275 - -
Psa4g3979 277 SUPERFAMILY Retrovirus zinc finger-like domains 156 181 IPR036875 GO:0003676|GO:0008270
Psa4g3979 277 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 275 IPR044598 GO:0000398|GO:0005689
Psa4g3979 277 SMART rrm1_1 68 141 IPR000504 GO:0003723
Psa4g3979 277 MobiDBLite consensus disorder prediction 30 60 - -
Psa4g3979 277 MobiDBLite consensus disorder prediction 233 270 - -
Psa4g3979 277 MobiDBLite consensus disorder prediction 30 56 - -
Psa4g3979 277 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Psa4g3979 277 CDD RRM_ZCRB1 66 143 IPR034219 -
Psa4g3979 277 SUPERFAMILY RNA-binding domain, RBD 63 151 IPR035979 GO:0003676
Psa4g3979 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Psa4g3979 277 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Psa4g3979 277 MobiDBLite consensus disorder prediction 183 277 - -
Psa4g3979 277 Gene3D - 154 191 - -
Psa4g3979 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3979 Psa-Chr4 338085256 338086089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3979 67 143 Eukaryotic Initiation Factors Gene Family AT1G49760 35.065 6.08e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3979 K13154 - gmx:100814914 291.197