LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g3974	ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGTGACAGCGATGAAGACGACGACGTTTTCTACTACTGCTACTGCGTTTCGTCCTCAACCCCCAACACCACCACCGGCACCACATCCAGTAATCAACCCCAATCAAAACCGAACAACAAAGGTTCATCAATAGGAGGAACAGGTGAACCCTTAGCACCATCAAAATCGACGCTATACGTTTCTAATCTAGATTACTCCCTAACAAACTCCGATCTCCATACGCTCTTCTCTACTTTTGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCACACGCGCCTAAGCCGCGGTGTCGCGTTTGTCCAATTCGTTTCTCGTAATGACGCCCAACGCGCCTTGGCGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTAACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAAGCGCGTGTACAATACTGAGACTGCTTTGTGTTATGATACTCTAACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAAGCGCGTGTACAATACTGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTATGAGTGTCTTAAGAATCGGTTGGGGCCGAGGCCGCGGCCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGAGAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGAAGGAGGGTGGTCAGATTGCTGCGGAGCAGGTTGACGATTATTGGGCATCTGTTGTGGATGATGAAGCGGGTGAAAGGTTGCTGGGGAGAAACAGAAATCATGATGAGGGTTTGGACAACAACAAGACGAATAAGAAAGGGAAGAAAGCTGGGTATTTCAGTGATGATAGTGATCATGATGATGATGATTGA	927	0.4876	MSSKKKHKRKHSDSDEDDDVFYYCYCVSSSTPNTTTGTTSSNQPQSKPNNKGSSIGGTGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRNDAQRALAEMNKKILNGRTLTASIAADNGRAPEFIRKRVYNTETALCYDTLTASIAADNGRAPEFIRKRVYNTETALCYECGGHGHLSYECLKNRLGPRPRPQPKKPRRGFSGLRERDGEEEGDEEEKEGGQIAAEQVDDYWASVVDDEAGERLLGRNRNHDEGLDNNKTNKKGKKAGYFSDDSDHDDDD*	309

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g3974	308	SMART	rrm2_1	68	141	IPR003954	GO:0003676
	Psa4g3974	308	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	69	138	IPR000504	GO:0003723
	Psa4g3974	308	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	67	145	IPR000504	GO:0003723
	Psa4g3974	308	MobiDBLite	consensus disorder prediction	264	301	-	-
	Psa4g3974	308	MobiDBLite	consensus disorder prediction	32	56	-	-
	Psa4g3974	308	MobiDBLite	consensus disorder prediction	32	61	-	-
	Psa4g3974	308	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	167	306	-	-
	Psa4g3974	308	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	12	168	-	-
	Psa4g3974	308	ProSiteProfiles	Zinc finger CCHC-type profile.	196	209	IPR001878	GO:0003676\|GO:0008270
	Psa4g3974	308	CDD	RRM_ZCRB1	66	143	IPR034219	-
	Psa4g3974	308	SUPERFAMILY	RNA-binding domain, RBD	63	150	IPR035979	GO:0003676
	Psa4g3974	308	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	12	168	IPR044598	GO:0000398\|GO:0005689
	Psa4g3974	308	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	167	306	IPR044598	GO:0000398\|GO:0005689
	Psa4g3974	308	Gene3D	-	1	151	IPR012677	-
	Psa4g3974	308	MobiDBLite	consensus disorder prediction	216	308	-	-
	Psa4g3974	308	SMART	rrm1_1	68	141	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g3974	Psa-Chr4	337538501	337539524	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g3974	67	143	Eukaryotic Initiation Factors Gene Family	AT1G49760	40.260	1.07e-09	57.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g3974	K13154		-	gmx:100814914	272.707