Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3972 ATTACTCCCTAACAAACTCCGATCTCCATACGCTCTTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCACACGCGCCTAAGCTGCGGTGTCGCGTTTGTCCAACTCGTTTCTCGTAATGACGCCCAACGCGCCGTTGCGGAGATGAATAAGAAGATTCTCAATGGAAGGAATCTAACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGGTGTTTATTTGGAAGCGCGTGTACAATACTGAGACTGCTTTGTGTTATCAGTGTGGGGGGCATGGTCATTTTTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGTCCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGGTGGTCAGATTGCTGCGGAGCAGTTTGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAG 493 0.5213 YSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSCGVAFVQLVSRNDAQRAVAEMNKKILNGRNLTASIAADNGRAPVFIWKRVYNTETALCYQCGGHGHFSYECPKNQLGPRPRPQPKKPRRGFSGLRDRDGEEEGDEEEEGGQIAAEQFDDNWASVVDDEAGE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3972 163 Gene3D - 1 146 IPR012677 -
Psa4g3972 163 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 1 162 - -
Psa4g3972 163 SUPERFAMILY RNA-binding domain, RBD 1 73 IPR035979 GO:0003676
Psa4g3972 163 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Psa4g3972 163 Pfam Zinc knuckle 90 105 IPR001878 GO:0003676|GO:0008270
Psa4g3972 163 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 63 IPR000504 GO:0003723
Psa4g3972 163 SUPERFAMILY Retrovirus zinc finger-like domains 81 106 IPR036875 GO:0003676|GO:0008270
Psa4g3972 163 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 1 162 IPR044598 GO:0000398|GO:0005689
Psa4g3972 163 MobiDBLite consensus disorder prediction 131 145 - -
Psa4g3972 163 MobiDBLite consensus disorder prediction 104 163 - -
Psa4g3972 163 SMART rrm1_1 1 66 IPR000504 GO:0003723
Psa4g3972 163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 70 IPR000504 GO:0003723
Psa4g3972 163 Gene3D - 71 116 - -
Psa4g3972 163 ProSiteProfiles Zinc finger CCHC-type profile. 90 105 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3972 Psa-Chr4 337489261 337489753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3972 7 54 Eukaryotic Initiation Factors Gene Family AT3G11400 50.000 7.41e-08 48.9