LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g3972	ATTACTCCCTAACAAACTCCGATCTCCATACGCTCTTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCACACGCGCCTAAGCTGCGGTGTCGCGTTTGTCCAACTCGTTTCTCGTAATGACGCCCAACGCGCCGTTGCGGAGATGAATAAGAAGATTCTCAATGGAAGGAATCTAACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGGTGTTTATTTGGAAGCGCGTGTACAATACTGAGACTGCTTTGTGTTATCAGTGTGGGGGGCATGGTCATTTTTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGTCCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGGTGGTCAGATTGCTGCGGAGCAGTTTGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAG	493	0.5213	YSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSCGVAFVQLVSRNDAQRAVAEMNKKILNGRNLTASIAADNGRAPVFIWKRVYNTETALCYQCGGHGHFSYECPKNQLGPRPRPQPKKPRRGFSGLRDRDGEEEGDEEEEGGQIAAEQFDDNWASVVDDEAGE	163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g3972	163	Gene3D	-	1	146	IPR012677	-
	Psa4g3972	163	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	1	162	-	-
	Psa4g3972	163	SUPERFAMILY	RNA-binding domain, RBD	1	73	IPR035979	GO:0003676
	Psa4g3972	163	SMART	c2hcfinal6	89	105	IPR001878	GO:0003676\|GO:0008270
	Psa4g3972	163	Pfam	Zinc knuckle	90	105	IPR001878	GO:0003676\|GO:0008270
	Psa4g3972	163	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1	63	IPR000504	GO:0003723
	Psa4g3972	163	SUPERFAMILY	Retrovirus zinc finger-like domains	81	106	IPR036875	GO:0003676\|GO:0008270
	Psa4g3972	163	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	1	162	IPR044598	GO:0000398\|GO:0005689
	Psa4g3972	163	MobiDBLite	consensus disorder prediction	131	145	-	-
	Psa4g3972	163	MobiDBLite	consensus disorder prediction	104	163	-	-
	Psa4g3972	163	SMART	rrm1_1	1	66	IPR000504	GO:0003723
	Psa4g3972	163	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	1	70	IPR000504	GO:0003723
	Psa4g3972	163	Gene3D	-	71	116	-	-
	Psa4g3972	163	ProSiteProfiles	Zinc finger CCHC-type profile.	90	105	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g3972	Psa-Chr4	337489261	337489753	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g3972	7	54	Eukaryotic Initiation Factors Gene Family	AT3G11400	50.000	7.41e-08	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g3972	K13154		-	gmx:100814914	199.134