Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g3969 | ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACAGCGATGAAGACGATGACGTTTTCTACTACCGCTACTGCGCTTCGTCCTCAACCCCAACACCACCACCGGCACCACATCCAGTTTCTAATCTAGATTACTCCCTGACAAACTCCGATCTCCATACGCTCTTCTCTACTTTCGGCCGCATCGCGCGTGTAACCTTTCTCAAAGACCGTCACACGCGCCTAAGCCGCGGTGTCGCGTTTGTCCATTTCGTTTCTCGTAATGACGCCCAACGCGCCGTGGCGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTAACTGCTTCTATTGCTGCTGATAATGTACATGCTCCGGAGTTTATTCGGAAGCGCGTGTATAATACTGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGGCCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGAGGGTGGTCAGATTGCTGCGGAGCAGTTTGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAGGTTGCTGGGGAGAAACAGAAATGATGATGAGGGTTTGGACAACAACAAGACGAAGAAGAAAGGGAAGAAAGCTGGGTATTTCAGTGATGAGAGTGATCATGATGATGATGATTGA | 744 | 0.5027 | MSSKKKHKRKHSDSDEDDDVFYYRYCASSSTPTPPPAPHPVSNLDYSLTNSDLHTLFSTFGRIARVTFLKDRHTRLSRGVAFVHFVSRNDAQRAVAEMNKKILNGRTLTASIAADNVHAPEFIRKRVYNTETALCYECGGHGHLSYECPKNQLGPRPRPQPKKPRRGFSGLRDRDGEEEGDEEEEEGGQIAAEQFDDNWASVVDDEAGERLLGRNRNDDEGLDNNKTKKKGKKAGYFSDESDHDDDD* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g3969 | 247 | MobiDBLite | consensus disorder prediction | 203 | 240 | - | - | |
| Psa4g3969 | 247 | PANTHER | ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 | 12 | 245 | - | - | |
| Psa4g3969 | 247 | SMART | c2hcfinal6 | 134 | 150 | IPR001878 | GO:0003676|GO:0008270 | |
| Psa4g3969 | 247 | PANTHER | ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 | 12 | 245 | IPR044598 | GO:0000398|GO:0005689 | |
| Psa4g3969 | 247 | MobiDBLite | consensus disorder prediction | 150 | 247 | - | - | |
| Psa4g3969 | 247 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 41 | 108 | IPR000504 | GO:0003723 | |
| Psa4g3969 | 247 | ProSiteProfiles | Zinc finger CCHC-type profile. | 135 | 150 | IPR001878 | GO:0003676|GO:0008270 | |
| Psa4g3969 | 247 | SUPERFAMILY | Retrovirus zinc finger-like domains | 128 | 151 | IPR036875 | GO:0003676|GO:0008270 | |
| Psa4g3969 | 247 | SUPERFAMILY | RNA-binding domain, RBD | 41 | 117 | IPR035979 | GO:0003676 | |
| Psa4g3969 | 247 | MobiDBLite | consensus disorder prediction | 176 | 191 | - | - | |
| Psa4g3969 | 247 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 41 | 115 | IPR000504 | GO:0003723 | |
| Psa4g3969 | 247 | Gene3D | - | 2 | 192 | IPR012677 | - | |
| Psa4g3969 | 247 | Pfam | Zinc knuckle | 135 | 150 | IPR001878 | GO:0003676|GO:0008270 | |
| Psa4g3969 | 247 | SMART | rrm1_1 | 41 | 111 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g3969 | Psa-Chr4 | 337426280 | 337427112 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g3969 | 41 | 99 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 47.458 | 6.13e-10 | 56.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g3969 | K13154 | - | gmx:100814914 | 251.136 |