Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3959 ATGGGAGAAGCAACACAATCAGCAGAAACAGCAACCCCGACAACCAAAACCAAAACAGCAGCCTCGTCAAAGAGAACTGGCGGAGGTGGAGAAATTGTGGAGGTGGAAGGAGGTCACATTGTCCGGTCTACTGGGCGGAAAGACCGTCACAGCAAAGTGTGCACCGCTAAAGGTCCCCGGGACCGCCGTGTACGGCTCTCGGCCCACACCGCGATCCAATTCTACGATGTGCAAGACCGTTTGGGCTACGACCGGCCTAGTAAGGCAGTTGATTGGCTTATCAAAAAAGCCAAATCCGCCATTGACGAACTCGCTCAGCTTCCCGCATGGAACCCCACCGCAACATGCTCTTCAACGCCACAACAGCAGCAAACTAACGAGTTGTACCGCCGGCAGTCCCCGGTGGACAACAGTCCAGTAACCGCATCCACCAGTCACCGCTTAGCGGCATTAGAGCGAAGAATACCACAGGAACAATTTTCTTCCCAGCCATTAGAGATAGACTATAATAACAGTAGCGGGAAGCATGGTTTTCTTCATGGCTCATTGGATACAGACATTGCGGATACTATTAAATCGTTTTTCCCAGTTGAAACGCCCACGGCATCGTTTCACAGCTACCCACAACCGCCGGATTTGCTCTCCCGAACTGCCGCAACCACTCAGCAAGATCTCCGCCTCTCCTTGCAATCTTTTCAAGATCCTATTATGCTTCACCACCAATCTCAAAGCCACCATGACCACCACCACAATCACCAAGTACTTTTCGCCGGAAACTCCTCACTCGGTTTCGACGGTGGTGGAACCAACAACAACATGTGGTCTGAGCAGCAGCAGCATCAAGAGGAACATGATAATGGCAGATTGCATAGAATGATGGCTTGGAATGCTAATGTTAATGCTGCAGATGGTGGTAACAGTGGCCACGGAGCTGGATTTGTGTTCAGCACACCCGCCCCAGCTTTCGGCGGTTTTGGCCAGCTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAATCCTTCAGTTCGTGCTTGGATAGATCCATCCATGGCGGGGACGGTGAATATGACCGATCACCACCATCACTATCTTTCGCCGATGATCCATCAGGCTTCTGTCTCTGGTGGTGGATTCTCCGGCTTTCGCATACCAACACGAATTCAAGGTGAAGAGGAACACGACGGCGTATCTGATAAACCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1233 0.515 MGEATQSAETATPTTKTKTAASSKRTGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAQLPAWNPTATCSSTPQQQQTNELYRRQSPVDNSPVTASTSHRLAALERRIPQEQFSSQPLEIDYNNSSGKHGFLHGSLDTDIADTIKSFFPVETPTASFHSYPQPPDLLSRTAATTQQDLRLSLQSFQDPIMLHHQSQSHHDHHHNHQVLFAGNSSLGFDGGGTNNNMWSEQQQHQEEHDNGRLHRMMAWNANVNAADGGNSGHGAGFVFSTPAPAFGGFGQLFSQRGPLQSSNNPSVRAWIDPSMAGTVNMTDHHHHYLSPMIHQASVSGGGFSGFRIPTRIQGEEEHDGVSDKPSSASSDSRH* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3959 410 MobiDBLite consensus disorder prediction 1 24 - -
Psa4g3959 410 MobiDBLite consensus disorder prediction 115 145 - -
Psa4g3959 410 ProSiteProfiles TCP domain profile. 46 104 IPR017887 -
Psa4g3959 410 MobiDBLite consensus disorder prediction 40 61 - -
Psa4g3959 410 MobiDBLite consensus disorder prediction 388 410 - -
Psa4g3959 410 Pfam TCP family transcription factor 45 127 IPR017887 -
Psa4g3959 410 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 17 410 - -
Psa4g3959 410 MobiDBLite consensus disorder prediction 1 61 - -
Psa4g3959 410 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 410 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3959 Psa-Chr4 336184000 336187537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3959 21 410 TCP Transcription Factor Family AT1G53230 47.805 5.29e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa4g3959 TCP 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3959 - - mtr:MTR_8g463380 632.098