Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3946 ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACAGCGATGAAGACGACGATGTTTTCTACTACCGCTACTGCGCTTCGTCCTCAACCCCCAACACCACCACCGGCACCACATCCAGTAATCAACCCCAATCAAAACGGAACAACAAAGGATCATCAATAGGAGGAACAGGTGAACCCTTAGCACCATCAAAATCGACGCTATACGTTTCTAATCTAGATTACTCCCTAACAAACTCCGATCTCCATACGCTATTCTCTACTTTCGACCGCATCGCGCGTGTAACCGTTCATAAAGACCGTCACACGCGCCTAAGCCGCGGTGTCGCGTTTCTCCAATTCTTTTCTCGTAATGACGCCCAACGCGTCGTGGCGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTAACTGCTTTTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAAGCGCGTGTACAATACTGAGGCTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCATATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGGCCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGGGGAGGAGGAAGGTGATGAGGAGGAGGAGGAGGGTG 652 0.5046 MSSKKKHKRKHSDSDEDDDVFYYRYCASSSTPNTTTGTTSSNQPQSKRNNKGSSIGGTGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFDRIARVTVHKDRHTRLSRGVAFLQFFSRNDAQRVVAEMNKKILNGRTLTAFIAADNGRAPEFIRKRVYNTEAALCYECGGHGHLSYECPKNQLGPRPRPQPKKPRRGFSGLRDRDGEEEGDEEEEEG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3946 217 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Psa4g3946 217 SUPERFAMILY RNA-binding domain, RBD 63 150 IPR035979 GO:0003676
Psa4g3946 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Psa4g3946 217 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676|GO:0008270
Psa4g3946 217 SUPERFAMILY Retrovirus zinc finger-like domains 156 181 IPR036875 GO:0003676|GO:0008270
Psa4g3946 217 MobiDBLite consensus disorder prediction 179 217 - -
Psa4g3946 217 MobiDBLite consensus disorder prediction 30 56 - -
Psa4g3946 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Psa4g3946 217 MobiDBLite consensus disorder prediction 30 61 - -
Psa4g3946 217 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 215 IPR044598 GO:0000398|GO:0005689
Psa4g3946 217 SMART rrm1_1 68 141 IPR000504 GO:0003723
Psa4g3946 217 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Psa4g3946 217 Gene3D - 31 217 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3946 Psa-Chr4 333552660 333553311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3946 46 143 Eukaryotic Initiation Factors Gene Family AT2G23350 35.714 3.29e-09 54.3