LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g3937	ATTACTCCCTAACAAACTCCGATCTCCATACGCTATTCTCTACTTTCGGCCGCATCGCGCGTGTAACCGTTCTCAAAGACCGTCACACGCGCCTAAGCCGCGGTGTCGCGTTTGTCCAATTCGTTTCTCGTAATGACGCCCAACGCGCCGTTGTGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTAACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGAAGTTTATTCGGAAGCGCGTGTACAATACTGAGACTACTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTTTGAGTGTCCTAAGAATCATTTGGGGACGAGGCCGCGGCCTCAGCCTAAGAAGCCGCGACGGGGATTTAGTGGGCTGAGGGATAGGGATGTGGAGGAGGAAGGTGATGAGGAGGAGGAGGAGGGTGGTCAGATTGCTGCGGAGCAGTTTGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAGATTGCTGGGGAGAAACAGAAATGATGATGAGGGTTTGGACAACAACAAGACGAAGAAGAAAGGGAAGAAAACTGGGTATTTCAGTGATGAGAGTGATCATGATGATGATGATTGA	611	0.4943	YSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRNDAQRAVVEMNKKILNGRTLTASIAADNGRAPKFIRKRVYNTETTLCYECGGHGHLSFECPKNHLGTRPRPQPKKPRRGFSGLRDRDVEEEGDEEEEEGGQIAAEQFDDNWASVVDDEAGERLLGRNRNDDEGLDNNKTKKKGKKTGYFSDESDHDDDD*	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g3937	202	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	1	70	IPR000504	GO:0003723
	Psa4g3937	202	SMART	rrm1_1	1	66	IPR000504	GO:0003723
	Psa4g3937	202	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	1	200	-	-
	Psa4g3937	202	MobiDBLite	consensus disorder prediction	158	195	-	-
	Psa4g3937	202	MobiDBLite	consensus disorder prediction	106	202	-	-
	Psa4g3937	202	Pfam	Zinc knuckle	90	105	IPR001878	GO:0003676\|GO:0008270
	Psa4g3937	202	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1	63	IPR000504	GO:0003723
	Psa4g3937	202	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	1	200	IPR044598	GO:0000398\|GO:0005689
	Psa4g3937	202	ProSiteProfiles	Zinc finger CCHC-type profile.	90	105	IPR001878	GO:0003676\|GO:0008270
	Psa4g3937	202	MobiDBLite	consensus disorder prediction	131	146	-	-
	Psa4g3937	202	SMART	c2hcfinal6	89	105	IPR001878	GO:0003676\|GO:0008270
	Psa4g3937	202	SUPERFAMILY	RNA-binding domain, RBD	1	77	IPR035979	GO:0003676
	Psa4g3937	202	SUPERFAMILY	Retrovirus zinc finger-like domains	79	106	IPR036875	GO:0003676\|GO:0008270
	Psa4g3937	202	Gene3D	-	1	147	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g3937	Psa-Chr4	332470842	332471452	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g3937	7	54	Eukaryotic Initiation Factors Gene Family	AT3G11400	54.167	1.81e-09	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g3937	K13154		-	gmx:100814914	230.335