Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3935 ATGGAACGAGACTTCAACATGTGGCTTTCTTTACGTATGAATCAAAGTGTCAATCATGATTTCCCCATCAGAAGGTTTTGTCCTGCAAGAATTGAACAAGAGATAGTACTTGATGATAATGAATTGTGTACTTTTGATGCCACCACCACTTCTTGTCTATTAGCTTCTTCAGAACTTGATGACTTTGTTGATAGCTTCATCAACATGGATCAGTATGAAGATAATGAGGTGAATGAGAAGAATCATCATCAAAGTTTTGATCATTTTATGGTCAATGAAGAAGAGAATATTGATGCATACTCCATGGAGGTGAATGATGTTATTGGATATGTTCCAACAACAATGGAGATATGTGATAATATCACAATCGCAGATCTCGTCATTCAAAAGTGTGTGCCTTGTGAAGAACGAATCAGTTTTCAAATGGACCAAGGTCTTGACTTGGTCCATACGTTACTGGCTTGTGCCGAGGCGGTTGGTTGCAGAGACAACCATCAAGCAAATTTGTTACTTAGTAAGATTCTGTCTCTGGCAAATCCATCAGGGGATTCATTGCAAAGAGTGACCTACTTTTTTGCCAAAGGATTGAAGTGTAGGTTATCACTTTATCCTTATAATGCATTTTCAAATAGTGCTTCTAATGATGTTTGTCTGATTACTAGGGAGAATAAGTTGGAAGCTTTTCAGCTTCTTTACCAAACAACACCATACATTACTTTTGGTTTCATGGCTGCAAATGAAGCGATATGTCAAGCATCAAAAGGAGAAAGCTCAATTCACATTATTGATCTAGGAATGGAGCATACTTTTCAATGGCCTTCACTTATAAGGAACCTCGCTTCAATGCCTGACGGGCCTCCAAAGCTCAGGATAACAGGATTCGGTTCTTCTGACGTGAAACTTGATACTGGCATGAGTTTGCTTGTGGCGGAAGCAATCTCATTGGGAATAGTCCTTGAATTCCGGATAATATTCGAACCTGCGACTCCTTCTTCTCTTACAATTGAGAACCTCAAGTTGGTAGAAGGCGAGTCTTTAGTTTTTAATAGCATCTTAAAATTGCACAAATATGTGAAAGAAAGTAGAGGTTATCTAAAGGAAATTCTCCAATCAATGAAGAAGCTAAATCCAATTGCAGTGACAGTTGTTGAGCAAGACACAAACCACAATGGACCATTCTTTGTTGGTAGGTTTTTGGAATCACTTCATTATTACTCAGCGGTATTTGATTCTCTTGAGGCAAGTATGGCAAGAAGTAGTCGAATCAGGATGAAAATAGAGAGAGCACACTTTGCAGAAGAAATTTGTAATGTTGTTGGTTATGAGGGTCCTGATAGAATGGAGAGACATGGAAGAGTAGATCAATGGAGAAGACAATTAGGAAGAGCAGGATTTCATGTTATGCCACTAAAGTGTACAAGTCAAGCTAGAACGGTGCTTTCTGTTTATGATTGTGATGGATATACATTGTCATGTGAAAAGGGTTGCCTTTTACTTGGTTGGAAAGGAAGATCTATTATGATGGCTTCTGCTTGGCAAGTGGCAAGTTTGTCATAA 1557 0.3854 MERDFNMWLSLRMNQSVNHDFPIRRFCPARIEQEIVLDDNELCTFDATTTSCLLASSELDDFVDSFINMDQYEDNEVNEKNHHQSFDHFMVNEEENIDAYSMEVNDVIGYVPTTMEICDNITIADLVIQKCVPCEERISFQMDQGLDLVHTLLACAEAVGCRDNHQANLLLSKILSLANPSGDSLQRVTYFFAKGLKCRLSLYPYNAFSNSASNDVCLITRENKLEAFQLLYQTTPYITFGFMAANEAICQASKGESSIHIIDLGMEHTFQWPSLIRNLASMPDGPPKLRITGFGSSDVKLDTGMSLLVAEAISLGIVLEFRIIFEPATPSSLTIENLKLVEGESLVFNSILKLHKYVKESRGYLKEILQSMKKLNPIAVTVVEQDTNHNGPFFVGRFLESLHYYSAVFDSLEASMARSSRIRMKIERAHFAEEICNVVGYEGPDRMERHGRVDQWRRQLGRAGFHVMPLKCTSQARTVLSVYDCDGYTLSCEKGCLLLGWKGRSIMMASAWQVASLS* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3935 518 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 4 515 - -
Psa4g3935 518 ProSiteProfiles GRAS family profile. 139 513 IPR005202 -
Psa4g3935 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 515 IPR005202 -
Psa4g3935 518 Pfam GRAS domain family 148 513 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3935 Psa-Chr4 332111027 332113082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3935 143 515 GRAS Transcription Factor Family AT3G03450 36.815 3.40e-73 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa4g3935 GRAS 4e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3935 - - gmx:100814931 692.575