Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3934 ATGATGGAACAATCAAGATTTCACAATCAGATTCCTTACAATACCATGGAACCTAGAAATGAGCATGGATCTCAGTCAGTAATGCAGGACTATCTGGACACCGTGTATGCTAATAGAACACAATCGGACCTTAAACCAGTACTCAATTATTCAATACAGACTGGTGAGGAATTTGCTCTTGAATTTATGAGAGACAGGCTAAATCTCAAGAACCCTGCATTTACAAATCTCCCTCATTCCAATTCAACTAATGGCATTGTAGGCATCACTCATGCAGGGTTTCCGAATGGTTCAACAGAGTTTAACAGCCAAACTACATGGTTACATGGGTCACCACCAAAAACTTTGTTGAATCAAGAGAATGCTCAATTTCGGCAAGGGTATGGTTCTTACGCTGCTTCCGATACCTCATCAAAGATCATCAAGTGTCTTTGTAGTTTTGGTGGTAGAATATTACCAAGACCAAGTGATGGGAAACTAAGGTATGTGGGGGGTCAGACACGTATTCTTCGTCTCAGAAAGGACATATCTTGGCCGGAGCTTAGGCGGAGAGCATTGTTAATCTACAATCTCGTTCATATACTCAAGTATCAACTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTCTCATCTGATGAGGATTTGCAGAATATGATGGAGGAGTATAACCTTATAGAAGATAGAGAACCCCCACAAAAGCTTAGGATTTTTTTGTTCTCAATGACTGATTTAGAAGATGCTCACTTCGCTCTTAGTACCATTGGTGAGGATTCTGAAGTCCAGTATGTTGTTGCTGTTAATGGTATGGACTTGGGATCAAGAAACACCTCAACCCCACTTGGTGTCAGCATTTCAAACGATGACATACATACATTTATCAGAAAAACCATCGAAAGGGAGACTAGTAATGTTTCTGTAGAGTCTATAGGTGTCAAGAATGCTCCCTTGACTAACAAATCTGACACTCCATTACCTACCCAGTCTTCCCAGCAAGGATTACCAACGTCTATAGGTGTTAGGAATGCTCCATTGACTAACAAATATGACACTCCATTGGCTACCCAGTCTTCACGGCAAGCATTACCAACATCTATTGGCGTCAGGAATGCTCCTTTGACTGCCAAATCTGACACTCCATTGGCTACCCAGTCATCACATCAAGTATTACCGACATCTTCAAATGCTTATGAAACTGATCAGCTGACTTATGGTGACCAAATGGTGCAAGCTGCGGAAATTAGTCGTCAATATCCTGTTCATAACCCTGTGGTTAGAGAGACCCCTATTTCTCTGGCTCCTCATCTTTTGAACAATCAACCAGGGATTCTGAATGAAGACCATCCTCCTAGTGGAGTACACGTACAAAAATCCGAACTATCTACCTTGCAGGTGAAAACAGTAAGTGATAATTCAAGCAAACAAGGGAGTGACCATGGCGACGTTCTATCCTTAGAAATCCCATCCCCCTCTCTGTTTCAGCCCATTGATGGTTACTTGAAAAAGAACGGTCCTGAAGCATCAGCTGCAGTTACCATGCTTGAGGGGCATCTACCTTCGTTCCCTTGCACAAAAAAAGTTCAGCACCAGGACTGTAAAGATGCTTCTTCTACATCTAGCAGTTCATTTGCTCCTAATTATGTTGATTCCCACTCCAATGCAATTGATTTGAGTTCTCTTCATCCCCCTCCAGTTCCTAAAAGAATTTACTATTCAGAAAGAACTCCGAGGGAGCAAGTAGAGGTCCTGAATCGGTCCTCAAAGTCAGATGATACACACAGCCCGCAGTTTGATGTGTCAGATTTGCTTTCTGATACCAAGCCAGAGGATCCAGTAACAGAATCTGGTGACAACTTGCATCATGGTAATCTGTTAGATCCAGATGACAAATCAAGTATTTCAGCAAAGCCCTTTCCAGAAGATGACCATACCATTGACAATGGGTTTGCTGGCCATCAAATGAATAAACCGTTGCTTGATACAAACAGTGAGATAAAGTCAAACCTGTCTGAGCACATCGATCCCGAGTTGAAGCAAGTCTTGCTGAGTAATGAAGGAATCAAAGACGTCGAAACTAATGATAATCATATCAAGCCCTTGTTTGATGAGGCCGAAACTAAATATGGTAAATCCGATCTACCTGCTGTTCACCATGTTTCTTCTGTTGAGCGCCTTGATGTTATTGCATCCAATCTTCCAGAGGTTGATTGGGGTGAGGCCTATGGTAAGGAATGTAATGATAACCCTGTGGTGCAAGAACTACCTGCTTCCTTAGCTGGGAATATAACCAAAGGTGTTTCTCAAGATTTTCCCCCTCCTAATGTTTCCAAGCAAATACCAGGTGACATTCTAATTGATATCGATGATCGATTTCCCCGTGAATTGCTTTCTGATATGTACTCTAAAGCAATACTTGAGGAAGACCCCTCCAATCCGCATCCACTATCCACAGATGGAGTAGGCTATAGTGTAAATATGGAAAATCATGAACCTAAAAGTTGGTCATATTTTGGAAAGCTGGCACAAGGGCTTGACAATGTTTCTCTTATTGATCAAGATCATCTTGGTTTTTCACATCATGTTACACCTCTAACAACTGATAGAGTTCCTCTAGATCGTGAGGATTCCAACCTCAATTTAGATGAAGAAGATCAGGACTTACATAGAAGGATTGAAACAGAAACCCATGCTCTGAAGTCCAACTATGATCAATCCCAACTTACTGACACCAAAAGTATGCAGTTTGAATACGAGGATGACAAGTTTGAAACCAAAAACTGTAATCTTTCTCCACTTGGTCCTTCTTCAGGAGGTTTTGATATCAGTTCTGTGCAGGTCATTAAGAATGAAGATCTTGAAGAGTTAAAGGAACTGGGATCTGGTACATTTGGGACTGTTTATCATGGAAAATGGAGAGGAACAGATGTTGCTATCAAAAGAATAAAGAAGAGTTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGCAGAGTTCTGGCGAGAAGCTGACATTCTTTCAAAGCTTCATCATCCAAATGTGGTTGCATTTTACGGTGTGGTACAGGATGGACCAGGAGGAACGATGGCTACTGTTACAGAATTCATGGTGGATGGTTCTCTTAGGCATGTATTACTTCAAAAGGATAGGTGTCTTGATCGCCGCAAAAAGCTGATAATTGCAATGGACGCAGCTTTTGGAATGGAATATTTACACTCAAAAAACATTGTGCATTTCGACTTAAAATGCGACAATTTGCTTGTAAACTTGAAAGATCCTTTGCGGCCAATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATTAAGCGAAATACCTTGATTACTGGTGGTGTGCGGGGCACTCTACCTTGGATGGCACCAGAGCTGCTGGATGGATGCAGCAGCAAGGTCTCAGAAAAGGTTGACGTGTTCTCCTTTGGCATAGTTTTATGGGAAATTTTAACTGGTGAGGAGCCATATGCCAATATGCTCTATGGTGCAATTATAGGTGGGATTGTAACTGACAAATTGAGGCCAACCATTCCAAGCAACTGTGATCTCGAATGGAGAACACTGATGGAACAATGTTGGGCGAAAGATCCTGTAGTTAGGCCTTCCTTCACAGAAATTGCAAGTCGGTTGCGCATAATGTCCGAAGCCGCAAGTCAAACAAAGCCACAGGGAAACAAACCATCTAAATGA 3705 0.4192 MMEQSRFHNQIPYNTMEPRNEHGSQSVMQDYLDTVYANRTQSDLKPVLNYSIQTGEEFALEFMRDRLNLKNPAFTNLPHSNSTNGIVGITHAGFPNGSTEFNSQTTWLHGSPPKTLLNQENAQFRQGYGSYAASDTSSKIIKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWPELRRRALLIYNLVHILKYQLPGEDLDALVSVSSDEDLQNMMEEYNLIEDREPPQKLRIFLFSMTDLEDAHFALSTIGEDSEVQYVVAVNGMDLGSRNTSTPLGVSISNDDIHTFIRKTIERETSNVSVESIGVKNAPLTNKSDTPLPTQSSQQGLPTSIGVRNAPLTNKYDTPLATQSSRQALPTSIGVRNAPLTAKSDTPLATQSSHQVLPTSSNAYETDQLTYGDQMVQAAEISRQYPVHNPVVRETPISLAPHLLNNQPGILNEDHPPSGVHVQKSELSTLQVKTVSDNSSKQGSDHGDVLSLEIPSPSLFQPIDGYLKKNGPEASAAVTMLEGHLPSFPCTKKVQHQDCKDASSTSSSSFAPNYVDSHSNAIDLSSLHPPPVPKRIYYSERTPREQVEVLNRSSKSDDTHSPQFDVSDLLSDTKPEDPVTESGDNLHHGNLLDPDDKSSISAKPFPEDDHTIDNGFAGHQMNKPLLDTNSEIKSNLSEHIDPELKQVLLSNEGIKDVETNDNHIKPLFDEAETKYGKSDLPAVHHVSSVERLDVIASNLPEVDWGEAYGKECNDNPVVQELPASLAGNITKGVSQDFPPPNVSKQIPGDILIDIDDRFPRELLSDMYSKAILEEDPSNPHPLSTDGVGYSVNMENHEPKSWSYFGKLAQGLDNVSLIDQDHLGFSHHVTPLTTDRVPLDREDSNLNLDEEDQDLHRRIETETHALKSNYDQSQLTDTKSMQFEYEDDKFETKNCNLSPLGPSSGGFDISSVQVIKNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTAEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEFMVDGSLRHVLLQKDRCLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLITGGVRGTLPWMAPELLDGCSSKVSEKVDVFSFGIVLWEILTGEEPYANMLYGAIIGGIVTDKLRPTIPSNCDLEWRTLMEQCWAKDPVVRPSFTEIASRLRIMSEAASQTKPQGNKPSK* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3934 1234 PRINTS Tyrosine kinase catalytic domain signature 1034 1047 IPR001245 GO:0004672|GO:0006468
Psa4g3934 1234 PRINTS Tyrosine kinase catalytic domain signature 1071 1089 IPR001245 GO:0004672|GO:0006468
Psa4g3934 1234 PRINTS Tyrosine kinase catalytic domain signature 1142 1164 IPR001245 GO:0004672|GO:0006468
Psa4g3934 1234 PRINTS Tyrosine kinase catalytic domain signature 1186 1208 IPR001245 GO:0004672|GO:0006468
Psa4g3934 1234 CDD PB1_UP2 144 240 - -
Psa4g3934 1234 SUPERFAMILY Protein kinase-like (PK-like) 941 1215 IPR011009 -
Psa4g3934 1234 CDD STKc_MAP3K-like 958 1215 - -
Psa4g3934 1234 Gene3D Phosphorylase Kinase; domain 1 945 1039 - -
Psa4g3934 1234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1077 1089 IPR008271 GO:0004672|GO:0006468
Psa4g3934 1234 SMART PB1_new 155 242 IPR000270 GO:0005515
Psa4g3934 1234 MobiDBLite consensus disorder prediction 571 595 - -
Psa4g3934 1234 SUPERFAMILY CAD & PB1 domains 156 244 - -
Psa4g3934 1234 Gene3D - 159 242 - -
Psa4g3934 1234 MobiDBLite consensus disorder prediction 603 626 - -
Psa4g3934 1234 Pfam PB1 domain 157 240 IPR000270 GO:0005515
Psa4g3934 1234 MobiDBLite consensus disorder prediction 374 394 - -
Psa4g3934 1234 Gene3D Transferase(Phosphotransferase) domain 1 1040 1234 - -
Psa4g3934 1234 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 109 1228 - -
Psa4g3934 1234 MobiDBLite consensus disorder prediction 570 626 - -
Psa4g3934 1234 SMART serkin_6 952 1218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3934 1234 ProSitePatterns Protein kinases ATP-binding region signature. 958 983 IPR017441 GO:0005524
Psa4g3934 1234 Pfam Protein tyrosine and serine/threonine kinase 953 1215 IPR001245 GO:0004672|GO:0006468
Psa4g3934 1234 ProSiteProfiles Protein kinase domain profile. 952 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3934 1234 PANTHER SERINE-THREONINE PROTEIN KINASE 109 1228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3934 Psa-Chr4 332102527 332110941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3934 2 1144 MAP Kinase Kinase Kinase AT1G79570 40.577 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Psa4g3934 PK_Tyr_Ser-Thr 1.2e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3934 - - gmx:100817937 1593.17