Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3923 ATGAAAGCTTGTTGTTCTTCAAGCCTGAATGAAGCTTTCTCAGAGACAACAAAATCAAAAAGTGTGGAAAATGTCTCTCTTGTTGATGATGATGATGTTAATGAAAGTGTGAATGTTGATGATTATGATGAAGGAAAAGAGCAATGTGTCCGAGGATTAGGTGTTGAAAGAGTTTCTTTATTTCAAACGAAGCAAGAAAAGCTGGGGGATTCAGATAAGCACACAATCATGGAGAGCAAAGAAAGGGAACATGAAGGTAGAGCTAACATATGTAATGATGAGAAGACGGAGAACAAAGAAAGGGATCATGGAGGTAGTGTTAACATCTGTAATGGTGAGAAAAAGGAATTCATGGAGAGCAAAGAAAGGGATCATGAAGGTAGAGTTAACATATGTAATGGTGAGAAGAAGGAATCCATGGATAACAATGGTTTGATGAATCAAAGGGATAAAAGCACACTTTTTCTGCCAAAGGAGTTGCGTTTAACTAAACGCCTTGCTGAATTCTACTGGGGCAACAAGACTACAGTGAAGAATGATGATTTCATTGTGATGGAGGTGAAGGGTGATGTGGTTGATCAGCAGCCACCACTGGTTTCTGTTGAGACGCATCCATTGATATGGAGCCTTAAGAAGGTGAAAAAAATCCAAAAGACCAAAGAGGAGGAGGAGGAGCAAGTGTTATGGGATGAAATGAATGCATCACTTAGAGAAGAAGAAGCTGAATCTATGATTGGAAATTTAGGGGAAAATGGAAAAATGGCAAGTCCATATTCTCTCTGTGAACATAATACTTTTCTCGACGAAGAGATTGGTGTATATTGCAAATTGTGTGGTTTTGTTGTCACTGATATCAAACATGTGTCACCACCAGTGGTTGATAGATTTCCCAACGAAGGTTCGGGAAAAAGAGCTTCGATTGATAATTCAGTAAATGTCTCACGCTTTGATGGATCTCAGTTCAATGTTTCTGATGGCGGTGACTCAGAGGCTAATCATTTCTCTCATGATAAAGGCACAGTTTGGGACCTAATTCCTGATGTGAAACAAACTTTATATCCTCACCAACAAGAAGGATTTGAGTTCATTTGGAAAAACTTGGCAGGAAACATCAATCTTCCCGAGTTGAAGTACGCCGATCCTCACAGAGAGGGTGGCTGTATTATTTCACATGCTCCCGGAACTGGAAAGACAAGGTTGACCATAGTGTTTCTCATGGCTTATTTGAAACTTTTCCCCGACTGTCATCCTGTTATTGTTGCTCCTGCGAGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGGGTTCCATTTCACAATTTTAACAATCTTGAATTATCTGATAAAGAGTATGAAGATGCTGTTAATGCAGATAATTGGTATAATTTACCTCATAGTAAAGATGCAACCCGAAAGGCGAAACTGATTTCATGGTTTAAAGAAAAGAGCATTATGGGAATCAGTTACAATTTATACGAGAAGCTAGCCGGAGGAGGAGGAGAATCCGAAGATAAGAAAAAGAAAAAATATGCAAGTGTGGAGAAGAGAAAAGAAAACAGTGATATCGGAAAGGTTCTACGCGAAATTCCTGGTTTGTTGGTGTTAGATGAAGGACACACACCAAGAAATCAAAGAAGTCGTATTTGGAAGGTATTGTCGAAGATTCAAACAAAGAAGCGAATTATACTTTCTGGAACTCCTTTCCAAAACAATTTCTATGAACTTTACAACACTTTGAGCTTAGTGAAGCCTTCTTTTCCTAACACCATACCGCGTGAGCTGAAGAAGTTTTGCCAGAAGCAGGAAACTAAAAAAAGGTCGAAAGAATGGAGCTGGGAACCAATTTATGGCAACACAACAGAAAATCCTTGTGACAATAAGATCATGCAATTGAAGTTTCTAATGGATCCCTTTGTTCATGTTCACAAAGGCGCGATCCTTCAAAAGAAGCTTCCTGGACTAAGAGATTGTGTGGTGGCTTTGAAGCCGGACCCTTTGCAGAAACAAATTCTTGAGAGCATTCGAAGTTGTCAAAACACATTGATCTTCGAGCATAAACTGACAATGGCATCTGTCCATCCATCTCTTTTGCTCGAATGCGGTCTTTTGGAAGAAGAGGAATCTGTTATTGACAAGAAGCGGTTAGAAAAGCTTAGATTGAACCCCTACGAAGGCGTGAAAACAAAGTTTTTGGTGGAGTTTGTGAGACTTTGTGATGCTGTTAATGAGAAAGTTCTTGTGTTCAGCCAATATATCCGTCCTTTAAGCTTAATTAAAGACCAATTAAACATGGCTTTTAATTGGAGCGAGGGGAAGGAAATGCTGTACATGGACGGAAAGGTTGATCTAAAGGACAAACAATCCTTAATCCATAGCTTCAATGATGAAAATTGCCAAGCAAAGATTCTCCTTGCATCGACAAAAGCTTGCTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTGGTGCTACTTGATGTTGTATGGAATCCGTCTGTAGAACGACAGGCTATAAGCAGAGCATATAGGATTGGACAGAAGAAGGTTGTATACACTTACCATCTGCTCACTCAAGGGACTACTGAATACCTAAAATATTGCAAGCAGGCGGAAAAGGATTGGTTATCTCAACTTGTTTTTTCAACTAAAAATACTGATAACGATGAGTTAAAGAGCTGTGCAGTGGAGTTTGAAGATAGAGTTCTTGATCAAATGAAACACCATGAAAAGCTCAAACACATGTTTGGTGAGTGTGTGCTACAGCCCAAGGAGCGCGATTTTGTTCACAGTTTCGGCCGTTCATTATGA 2820 0.3961 MKACCSSSLNEAFSETTKSKSVENVSLVDDDDVNESVNVDDYDEGKEQCVRGLGVERVSLFQTKQEKLGDSDKHTIMESKEREHEGRANICNDEKTENKERDHGGSVNICNGEKKEFMESKERDHEGRVNICNGEKKESMDNNGLMNQRDKSTLFLPKELRLTKRLAEFYWGNKTTVKNDDFIVMEVKGDVVDQQPPLVSVETHPLIWSLKKVKKIQKTKEEEEEQVLWDEMNASLREEEAESMIGNLGENGKMASPYSLCEHNTFLDEEIGVYCKLCGFVVTDIKHVSPPVVDRFPNEGSGKRASIDNSVNVSRFDGSQFNVSDGGDSEANHFSHDKGTVWDLIPDVKQTLYPHQQEGFEFIWKNLAGNINLPELKYADPHREGGCIISHAPGTGKTRLTIVFLMAYLKLFPDCHPVIVAPASLLLTWEDEFKKWDIGVPFHNFNNLELSDKEYEDAVNADNWYNLPHSKDATRKAKLISWFKEKSIMGISYNLYEKLAGGGGESEDKKKKKYASVEKRKENSDIGKVLREIPGLLVLDEGHTPRNQRSRIWKVLSKIQTKKRIILSGTPFQNNFYELYNTLSLVKPSFPNTIPRELKKFCQKQETKKRSKEWSWEPIYGNTTENPCDNKIMQLKFLMDPFVHVHKGAILQKKLPGLRDCVVALKPDPLQKQILESIRSCQNTLIFEHKLTMASVHPSLLLECGLLEEEESVIDKKRLEKLRLNPYEGVKTKFLVEFVRLCDAVNEKVLVFSQYIRPLSLIKDQLNMAFNWSEGKEMLYMDGKVDLKDKQSLIHSFNDENCQAKILLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLTQGTTEYLKYCKQAEKDWLSQLVFSTKNTDNDELKSCAVEFEDRVLDQMKHHEKLKHMFGECVLQPKERDFVHSFGRSL* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3923 939 Gene3D - 328 620 IPR038718 -
Psa4g3923 939 SMART helicmild6 760 849 IPR001650 -
Psa4g3923 939 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 378 589 IPR014001 -
Psa4g3923 939 Pfam SNF2-related domain 371 677 IPR000330 GO:0005524|GO:0140658
Psa4g3923 939 CDD SF2_C_SNF 731 860 - -
Psa4g3923 939 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 6 936 IPR044567 GO:0080188
Psa4g3923 939 SMART ultradead3 348 597 IPR014001 -
Psa4g3923 939 Gene3D - 656 930 IPR027417 -
Psa4g3923 939 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 737 890 IPR001650 -
Psa4g3923 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 890 IPR027417 -
Psa4g3923 939 Pfam Helicase conserved C-terminal domain 742 849 IPR001650 -
Psa4g3923 939 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 6 936 - -
Psa4g3923 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 608 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3923 Psa-Chr4 327834937 327838589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3923 747 900 RAD5 or RAD16-like Gene Family AT5G43530 38.312 5.03e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g3923 SNF2_N 2.3e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3923 K10875 - gmx:100806733 907.901