Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3915 ATGTCAAGCAAGAAGAAACACAAACGAAAACACAGCGACAGCGATGAAGACGACGACGTTTTCTACTACCTCTACTGCGCTTCTTCCTCAACCCCCAACACCACCACCGGCACCACATCCAGTAATCAACCCCAATCAAAACCGAACAACAAAGGATCATCAATAGGAGGAACAGGTGAACCCTTAGCACCATCAAAATCGACGTTATACGTTTCTAACCTAGATTACTCCCTAACAAACTCCGATCTCCATACGCTCTTCTCTACTTTCGGCCGCATTGCGCGTGTAACCGTTCTCAAAGACCGTCACACGCACCTAAGCCGCGGTGTCGCGTTTGTCCAATTCCTTTCTCGTAATGACGCCCAACGCGCCGTGGCGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTAACTGCTTCTATTGCTGCTGATAATGGACGTCCTCCGGAGTTTATTCGGAAGCGCGTGGATGGGGAGGAGGAAGGTGATAAGGAGGAGGAGGAGGGTGGTCAGATTGCTGCGGAGCAGTTTGACGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGTGAAAGGTTGCTGGGGAGAAACAGAAATGATGATGAGGGTTTGGACAACAACAAGACGAAGAAGAAAGGGAAGAAAGCTGGGTATTTCAGTGATGAGAGTGATCATGATGATGATGATTGA 693 0.4834 MSSKKKHKRKHSDSDEDDDVFYYLYCASSSTPNTTTGTTSSNQPQSKPNNKGSSIGGTGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTHLSRGVAFVQFLSRNDAQRAVAEMNKKILNGRTLTASIAADNGRPPEFIRKRVDGEEEGDKEEEEGGQIAAEQFDDNWASVVDDEAGERLLGRNRNDDEGLDNNKTKKKGKKAGYFSDESDHDDDD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3915 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Psa4g3915 230 MobiDBLite consensus disorder prediction 31 61 - -
Psa4g3915 230 MobiDBLite consensus disorder prediction 143 230 - -
Psa4g3915 230 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 162 228 - -
Psa4g3915 230 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 157 - -
Psa4g3915 230 MobiDBLite consensus disorder prediction 31 56 - -
Psa4g3915 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Psa4g3915 230 SMART rrm1_1 68 141 IPR000504 GO:0003723
Psa4g3915 230 SUPERFAMILY RNA-binding domain, RBD 63 155 IPR035979 GO:0003676
Psa4g3915 230 CDD RRM_ZCRB1 66 143 IPR034219 -
Psa4g3915 230 SMART rrm2_1 68 141 IPR003954 GO:0003676
Psa4g3915 230 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 162 228 IPR044598 GO:0000398|GO:0005689
Psa4g3915 230 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 157 IPR044598 GO:0000398|GO:0005689
Psa4g3915 230 MobiDBLite consensus disorder prediction 186 223 - -
Psa4g3915 230 Gene3D - 1 151 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3915 Psa-Chr4 326790661 326791448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3915 66 129 Eukaryotic Initiation Factors Gene Family AT3G11400 43.750 1.69e-10 58.2