Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3880 ATGGCTGATTCTTCCTTTGAGATAGACATCAACCAGAGAAGACACTATCCAACTCCAGTGAGTTATCAGAGTGTATCTGGCTCTAGCTCCTTCATACATTCCACTTCTCGAAGCAATGCGACTCCAAGAACGAGAAGAACTCGCCGCAACAAAATTCCATCCACACCCTTTGCCTCAGACGATGACCGTTCATGGCAAAGTGAAGTTTCGTGGAAGTTTGAACCAACCGGGTTGCGTGAACATAGCACAAATTTCGGGTCTGTTCTTAGTCCATGGCCAACCAACTCCGCCTCTGATCGTAGTCGTGTGTTTCGCCAGTCGGCTAATGACTATTACCTTTCTAGAATAGGCGGTTTTCGTGGCCATAGAGACTCAACAAATGAACATTCTTCGTATGGGAGAGTTGAGCTTAGGAGCCATGTTGCTAGGGACAATAATGATCATAGTTACTTTGATCAATATAGTGGATTCTCCAAATTGGGAATCATCAAAGAAGGAGTTAGTAACGGAAATCGTAATATTAATAATAAGACTAGTCCGTTAGCAGAGGAAGACGAGCTCAGTGTGATCGATTATAGTATATCAGATGAACATGTTAAACGTGATCGCGATCATGGTCATGCAGTACCACCAAACGGTAGAAAATCTCCTAGTCAAAATTATGGTGGTGGTGGTTATAGTCATTATGAGAGTAAAATGGTATCAGGCTTTGATGATGAAGGTGATGAGGATATCGATGAGGATGATGATGATGCTGCAGGTCCTCCAAAGAATGTTGGGCTGTTTAGCTTGTTTAGATATACAAGAAATTGGGATTGGTTACTTGTGTTTATCGGCTGTGTAGGAGCTCTTATAAATGGCGGATCACTTCCTTGGTATTCTTATCTTTTTGGAAACTTGGTTAACAAGCTTTCAAGAGAAGCGAAAAATGACAAAGCTCAATTGATGAAGGATGTAGAGCAGATATGTGTATTTATGACTGGCTTAGCTGCAGTTGTGGTAGTTGGAGCATATATGGAGATTACATGTTGGAGACTAGTCGGGGAGAGATCAGCTCAACGAATAAGAACCGAGTATCTAAGAGCAATTCTTCGACAGGACATAAGTTTCTTCGATACGGAGATTAATACCGGTGATATCATGCATGGAATTGCTAGCGATGTTGCACAAATTCAAGAAGTTATGGGAGAAAAGATGGCTCACTTCATTCATCATGTGTTTACATTCATATGTGGATATGCAGTTGGGTTTAAAAGATCATGGAAAGTATCATTGGTTGTATTCTCAGTCACACCATTAACAATGTTATGTGGTATGACTTACAAAGCACTTTATGGTGGCCTAACCGCAAAAGAAGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGGCTATAAGTTCGATTAGGACAGTGTTTTCTTTTGTTGCTGAAAGCCAATTGGGTGAAAAATATTCTGAATTACTTGAAAAATCAGCTCCAATTGGAGCTAGAATTGGTTTTGCTAAAGGTGCAGGAATGGGTGTTATCTACTTAGTAACATATTCTACATGGGCTTTGGCTTTTTGGTATGGTTCTATCTTAATTTCCAAGGGTGAACTTGATGGTGGTTCTGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGTGGAAGAGGCTTGGCATTGGCACTTTCATATTTCGCGCAATTTGCACAAGGAACTGTTGCAGCAAGCCGCGTGTTCTATATTATAGACAGAATTCCTGAGATTGATCCATATAATTCTGAGGGTAGGAAGCTTTCATCTGCTCGCGGAAGGATTGAGTTAAAGAATGTTAGTTTTGCATATCCATCTCGTCCGGATTCACTTATACTTAATTCCATTAATTTGGTATTTCCATCTTCGAAAACATTGGCATTGGTTGGTGCAAGTGGAGGTGGAAAATCAACTATCTTTGCTCTCATAGAAAGGTTCTATGACCCTATAGAAGGGATTGTTACCTTGGATGGTCATGATTTGAGGTCACTGCAAGTAAAGTGGTTAAGAGATCAAATTGGGATGGTTGGTCAAGAGCCGATTCTGTTTGCTACATCTATACTCGAAAATGTGATGATGGGGAAAGATAATGCAACCAAGGAAGAAGCGATTTCTGCCTGTATTGCTGCTGATGCTCACAAGTTCATCTCTAGCTTGCCGTTACGTTATGACACTCAGGTTGGTGATAGAGGCACAAAACTTTCAGGAGGTCAAAAGCAAAGAATTGCATTGGCTAGAGCAATGATAAAAAATCCCAAAATTCTTCTTTTAGATGAACCGACTAGTGCTCTTGACGCTGAGTCGGAGGCTGCAGTCCAAAGGGCCATTGACAAGATTTCTGCAGGCAGAACAACCATTGTCATTGCTCATAGGATAGCTACGGTGAAGAATGCCGATGCCATTGTAGTTCTTGAACATGGTTCTGTAACTGAGATCGGTGACCATCGCCAGCTTATGGCGAAATCTGGAACCTACTACAACCTTGTCAAACTTGCAACTGAATCCATTTCAAAACCTCTTCCTGTAGAAAGTCGCATGCAAAAAACCAACGATTTATCGTCTATCAATAATAAATATGCTTCTGATATAGCAAAATCAAGTTATCTAGTCGATATCTCGAGGTCTAAGCACATGGATTCAATGAAGGATGAGAGTCAAGAAGATACTGAAGACAAACAAGATAAAAAGCCAAGAAAATACAAACTTTCTGAGGTATGGAAATTGCAAAAGCCGGAGTTTATGATGCTATCTTCCGGCCTTGTTATGGGAATGTTTGCAGGCGCTTTTCTTTCCCTTTTTCCATTGGTTTTAGGCATATCCCTTGGAGTATATTTTGACAATGATACTTCAAAAATGAAAAGAGATGTAGGTTACCTTTGTTTAGTACTTGTCGGACTCGGATTCGGTTGCATACTTTCCATGACAGGACAACAAGGTTTATGTGGTTGGGCAGGTTCAAAACTAACCCTTAGGGTTAGAAACCTCTTGTTTCAATCAATACTAAGACAAGAACCTGGATGGTTTGATTTTGATGAAAACTCGACCGGTGTATTAGTATCAAGACTCTCAATAGACGCGGTTAGTTTCCGTTCAGTACTCGGCGACAGATTCTCAGTACTTCTTATGGGATTGAGTTCAGCTGCTGTTGGACTTGGCGTGTCCTTCGCCTTTAATGTGAAACTAACCCTTGTTGCAGCTGCTGTAACTCCTTTGACCCTTGGTGCAAGTTACATAAACTTGATCATAAACATTGGTCCGAAAATCGATAACAACTCGTATGCAAGAGCTAGCAATATCGCTTCCGGTGCAGTTTCGAATATTAGGACAGTTGCTACATTTTCTGCTCAGGAACAGATAGTTAAATCCTTTGATAAAGCCTTATCAGAACCAAGGAAAAAATCATTAAAAAGTTCACAGCTTCAAGGTCTTGTTTTTGGACTCTTTCAAGGTGCTATGTATGCATCATACACCTTAACTCTTTGGTTCGGCGCATATCTTGTAAAACACGACGAAGGAAAATTTGAAGATGTTTATAAGATTTTTCTCATTCTTGTTTTGAGTTCGTTTTCTGTTGGACAACTAGCTGGTTTAGCACCTGATACTTCTATGGCCGCTACATCAATTCCTGCAGTTCAAGATGTTATAAACAGAAAACCATTGATAGGAAATGATGGAAGAAAAACTAGAAAAGTTGATAAATCAAAGAGCTTCAAAATAGAATTCAAAATGGTGACATTTGCATATCCATCAAGGCCTGAGATAACTGTGTTGAGGGATTTCTGTTTGAAGGTTAAAGGCGGAAGTACTGTGGCATTGGTGGGACCAAGTGGATCAGGAAAATCAACCGTTGTGTGGATGACACAACGGTTTTATGATCCTGATCAAGGGAAGGTTACGATGAGTGGTGTCGATTTGAGGGAGATTGATGTAAAGTGGTTGAGGAGACAAATTGGTTTGGTTGGTCAAGAACCTGCACTTTTTGCTGGGAGTATAAGGGAAAATATTGCATTTGGTGACCAAAAGGCCTCATGGGCCGAAATTGAAGCTGCTGCAATGGAGGCTTACATTCACAAGTTTATCAGTGGACTTCCTCAGGGTTATGAAACTCAGGTTGGTGAGAGTGGAGTCCAATTATCAGGTGGACAAAAACAAAGAATAGCTATAGCAAGAGCAATATTGAAGAAATCAAAGGTACTTCTACTTGATGAAGCAAGTAGTGCATTGGACTTGGAATCAGAAAAACACATCCAAGAAGCTCTTAAGAATGTTTCCAAAGAGGCAACAACAATAATCGTTGCTCACCGTCTTTCCACAATCAGAGAAGCCGATAAAATTGCAGTGATGAGAAATGGTGAAGTTGTTGAGTATGGTAGCCATGACACTCTTATTTCTTCACTTCAAAATGGTTTGTATGCTAGCCTTGTTAGAGCTGAGACTGAAGCCAATGCATTTTCTTGA 4476 0.4044 MADSSFEIDINQRRHYPTPVSYQSVSGSSSFIHSTSRSNATPRTRRTRRNKIPSTPFASDDDRSWQSEVSWKFEPTGLREHSTNFGSVLSPWPTNSASDRSRVFRQSANDYYLSRIGGFRGHRDSTNEHSSYGRVELRSHVARDNNDHSYFDQYSGFSKLGIIKEGVSNGNRNINNKTSPLAEEDELSVIDYSISDEHVKRDRDHGHAVPPNGRKSPSQNYGGGGYSHYESKMVSGFDDEGDEDIDEDDDDAAGPPKNVGLFSLFRYTRNWDWLLVFIGCVGALINGGSLPWYSYLFGNLVNKLSREAKNDKAQLMKDVEQICVFMTGLAAVVVVGAYMEITCWRLVGERSAQRIRTEYLRAILRQDISFFDTEINTGDIMHGIASDVAQIQEVMGEKMAHFIHHVFTFICGYAVGFKRSWKVSLVVFSVTPLTMLCGMTYKALYGGLTAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLGEKYSELLEKSAPIGARIGFAKGAGMGVIYLVTYSTWALAFWYGSILISKGELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYIIDRIPEIDPYNSEGRKLSSARGRIELKNVSFAYPSRPDSLILNSINLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIVTLDGHDLRSLQVKWLRDQIGMVGQEPILFATSILENVMMGKDNATKEEAISACIAADAHKFISSLPLRYDTQVGDRGTKLSGGQKQRIALARAMIKNPKILLLDEPTSALDAESEAAVQRAIDKISAGRTTIVIAHRIATVKNADAIVVLEHGSVTEIGDHRQLMAKSGTYYNLVKLATESISKPLPVESRMQKTNDLSSINNKYASDIAKSSYLVDISRSKHMDSMKDESQEDTEDKQDKKPRKYKLSEVWKLQKPEFMMLSSGLVMGMFAGAFLSLFPLVLGISLGVYFDNDTSKMKRDVGYLCLVLVGLGFGCILSMTGQQGLCGWAGSKLTLRVRNLLFQSILRQEPGWFDFDENSTGVLVSRLSIDAVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNVKLTLVAAAVTPLTLGASYINLIINIGPKIDNNSYARASNIASGAVSNIRTVATFSAQEQIVKSFDKALSEPRKKSLKSSQLQGLVFGLFQGAMYASYTLTLWFGAYLVKHDEGKFEDVYKIFLILVLSSFSVGQLAGLAPDTSMAATSIPAVQDVINRKPLIGNDGRKTRKVDKSKSFKIEFKMVTFAYPSRPEITVLRDFCLKVKGGSTVALVGPSGSGKSTVVWMTQRFYDPDQGKVTMSGVDLREIDVKWLRRQIGLVGQEPALFAGSIRENIAFGDQKASWAEIEAAAMEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLESEKHIQEALKNVSKEATTIIVAHRLSTIREADKIAVMRNGEVVEYGSHDTLISSLQNGLYASLVRAETEANAFS* 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3880 1491 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 277 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g3880 1491 Gene3D - 591 839 IPR027417 -
Psa4g3880 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 837 IPR027417 -
Psa4g3880 1491 CDD ABC_MTABC3_MDL1_MDL2 1245 1483 - -
Psa4g3880 1491 CDD ABC_6TM_Pgp_ABCB1_D2_like 912 1227 - -
Psa4g3880 1491 ProSitePatterns ABC transporters family signature. 740 754 IPR017871 GO:0005524
Psa4g3880 1491 MobiDBLite consensus disorder prediction 883 902 - -
Psa4g3880 1491 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 925 1209 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g3880 1491 CDD ABC_6TM_Pgp_ABCB1_D1_like 277 574 - -
Psa4g3880 1491 Gene3D ABC transporter type 1, transmembrane domain 872 1088 IPR036640 GO:0005524|GO:0016021
Psa4g3880 1491 Gene3D ABC transporter type 1, transmembrane domain 1096 1242 IPR036640 GO:0005524|GO:0016021
Psa4g3880 1491 SUPERFAMILY ABC transporter transmembrane region 258 585 IPR036640 GO:0005524|GO:0016021
Psa4g3880 1491 ProSitePatterns ABC transporters family signature. 1384 1398 IPR017871 GO:0005524
Psa4g3880 1491 CDD ABC_MTABC3_MDL1_MDL2 601 838 - -
Psa4g3880 1491 MobiDBLite consensus disorder prediction 1 61 - -
Psa4g3880 1491 Pfam ABC transporter 619 768 IPR003439 GO:0005524
Psa4g3880 1491 Pfam ABC transporter 1264 1411 IPR003439 GO:0005524
Psa4g3880 1491 PANTHER ABC TRANSPORTER B FAMILY 215 1490 - -
Psa4g3880 1491 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1245 1481 IPR003439 GO:0005524
Psa4g3880 1491 Pfam ABC transporter transmembrane region 276 548 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g3880 1491 Pfam ABC transporter transmembrane region 926 1193 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g3880 1491 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 837 IPR003439 GO:0005524
Psa4g3880 1491 SMART AAA_5 628 814 IPR003593 -
Psa4g3880 1491 SMART AAA_5 1272 1458 IPR003593 -
Psa4g3880 1491 Gene3D ABC transporter type 1, transmembrane domain 263 846 IPR036640 GO:0005524|GO:0016021
Psa4g3880 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1241 1482 IPR027417 -
Psa4g3880 1491 PANTHER - 215 1490 - -
Psa4g3880 1491 SUPERFAMILY ABC transporter transmembrane region 911 1225 IPR036640 GO:0005524|GO:0016021
Psa4g3880 1491 MobiDBLite consensus disorder prediction 200 221 - -
Psa4g3880 1491 Gene3D - 1243 1485 IPR027417 -
Psa4g3880 1491 MobiDBLite consensus disorder prediction 16 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3880 Psa-Chr4 324707287 324713209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3880 953 1488 Calmodulin-binding Proteins AT2G36910 38.476 2.44e-104 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3880 K05658 - gmx:100816700 2273.05