Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3877 ATGCAGAATCACAGGTTGAAGCAGCAGCATCAGCATCAACAACAACAACAACAAGCTATGATGCAACAAGCTCTTCTTCAACAACAGTCTCTCTACCACCCTGGTCTCCTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGCAACGTTCATACCCAGGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCAGGTACTGGCCCAGTTGAAGGGTGTAAACTTTTTAGGAAAGAAAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTGGCCATATTAACTCTCAACGGAAGGCATCTTTTTGGGCAACCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACTGATGCTACACTTTTTGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGCTCAAGGGGATTTGGATTTGTTTCATTCCGTAGTCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGGTGGCATTGAAGAGAAGCAAACCCCAGAAAACAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGAGGATGGTAAAGAGACACCTAACAGTGATGCTCCTGAGAACAATCCTCAATATACAACTGTTTATGTGGGTAACCTTGGTTCTGAGGCAACACAGCTTGATCTCCATCGTCATTTCTATACCCTTGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGATTTGGGTTTGTGAGATTTAGTACTCATGCTGAAGCAGCTCTGGCAATTCAGATGGGAAACACCCAGTCTTATCTCTGCGGAAAACTAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCCGGAACTGCTTCAAATCCTCTTCCTCCACCTGCTGCTGCGCCTTTGCCAGGTCTGTCCGCAACTGATATTTTGGGCTACGAGAGGCAGATAGCAATGAGCAAGATGGGCGGTGTTCATGCTGCATTGATGCATCCCCAAGCGCAACATCCTCTTAAGCAGGCTGCAATCGGAGCAAGCCAGGCGATATATGACGGTGGGTTCCAAAATGTTGCTGCTGCACAGCAAATGATGTACTATCAGTAA 1278 0.4656 MQNHRLKQQHQHQQQQQQAMMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQTPENKSVVELTNGSSEDGKETPNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFYTLGAGVIEEVRVQRDKGFGFVRFSTHAEAALAIQMGNTQSYLCGKLIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDILGYERQIAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3877 425 Gene3D - 142 233 IPR012677 -
Psa4g3877 425 Gene3D - 1 141 IPR012677 -
Psa4g3877 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Psa4g3877 425 MobiDBLite consensus disorder prediction 237 263 - -
Psa4g3877 425 MobiDBLite consensus disorder prediction 225 263 - -
Psa4g3877 425 MobiDBLite consensus disorder prediction 1 20 - -
Psa4g3877 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 406 - -
Psa4g3877 425 SUPERFAMILY RNA-binding domain, RBD 254 348 IPR035979 GO:0003676
Psa4g3877 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 134 IPR000504 GO:0003723
Psa4g3877 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 341 IPR000504 GO:0003723
Psa4g3877 425 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 9 406 - -
Psa4g3877 425 CDD RRM2_PUB1 146 220 - -
Psa4g3877 425 SUPERFAMILY RNA-binding domain, RBD 58 223 IPR035979 GO:0003676
Psa4g3877 425 SMART rrm1_1 146 219 IPR000504 GO:0003723
Psa4g3877 425 SMART rrm1_1 61 130 IPR000504 GO:0003723
Psa4g3877 425 SMART rrm1_1 267 337 IPR000504 GO:0003723
Psa4g3877 425 CDD RRM3_TIA1_like 266 341 - -
Psa4g3877 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Psa4g3877 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 128 IPR000504 GO:0003723
Psa4g3877 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 327 IPR000504 GO:0003723
Psa4g3877 425 CDD RRM1_TIA1_like 62 132 - -
Psa4g3877 425 Gene3D - 243 345 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3877 Psa-Chr4 324142473 324147074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3877 55 334 Eukaryotic Initiation Factors Gene Family AT1G49760 29.730 2.24e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3877 K13201 - gmx:100781227 749.969