Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3869 ATGGCTACCAAAGATTCATCATTCAAGTTTCACCAAATCATCATCGATAGTGAAGGATCCAACTCCACTTCAGAATGGGACGATTCCGAAGAAGACCCCGATTTCGAAATGCTCCAAGAAACCCATCGAAGCTTCTCCAACCTCTCACTCACGAACAAGGCGAAAAATCGCATTGATGATGATAAGGGTCTGGCTACTGCTGAGATGATCAGTGCAGTTTCTGTTGATGATGAAAATTCTGAAACAGTTCAGAAATTAATAAAGGATGGACTGCTAGAGAAACTTAAAGTGGACCAATGCAAGATGTATTTGAAGAAGAATGGTCTGAGGTTAACTGGAAATAAGGACACACTTATCCAGCGTATAAAGGAGCATCAAGAGATTATAAATGGTGGAGGGGAGAAAAAATACCCGCCTCATAGCTTTGTTTTGAATTGTAAAGGTGACGCATGCACTGGTGATGTTGTTCTGTTTGAGCAAAATGTGTATGAAATGTTCAACATAGCATCGAGGAGTGGTGGCGGTCCACCGTGTGGCACAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGCGCTGCCAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGCAAGGGAGAGAAGCCTCTACCTCCCCTTCATCCTCTACTGATAAAGGGTCGAAACCTTTATCGGTTGAAGACTTTGAGACAGAGATGGGAAGATGAAGAGAAAAGGCGGAAAATGTTAATGGAAAAACACTCTCGGGGATTCGTTGCTAGGGCAGATAGGGAAGCAAGGATACAAGAAAAGGAGCTGAGAAAATCAATGAAGGAAAATAGGATCTCGAAAAAGGATTCAGGAAAGAACCAATTGCAATCACATTCATCCATTTCAAAGTCACAAAATCAACCTCAAGAAACAAAAACTGTATTCATTACTTCAACATCTGCAAGTGTACCTAAACCAGCAGTGCTAACTGAACAGCATGTTCAATCAATTGATTCTCGAACTGTCGCAATGGGATCTAACCAGTTCAGAAATTCAGGAAATTCATCTTTTAGTGCAAACTACCATTCCGCAGTCAACCATTTCAGAGACAAACCGATTAGTATTGAGAGATACCATCCTTCCATTGTTGACACAAACAACATTGATGAGAAAACTTTTTATCCAAGGAAGCCTTTGGCAAGTGCAAATAACTTTTTTCCGAGTTTGGAGAATGCAAATCACATGCATGCAGGGTTCCCGAACCGAGGAAGCTATCAGCAAAAACAGTTTTGCCGACATTTTGCTAGGGGAAGATGCCATTTTGGAGATAACTGCAAGTTCTTACATGGTTAG 1335 0.415 MATKDSSFKFHQIIIDSEGSNSTSEWDDSEEDPDFEMLQETHRSFSNLSLTNKAKNRIDDDKGLATAEMISAVSVDDENSETVQKLIKDGLLEKLKVDQCKMYLKKNGLRLTGNKDTLIQRIKEHQEIINGGGEKKYPPHSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSGGGPPCGTRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQRWEDEEKRRKMLMEKHSRGFVARADREARIQEKELRKSMKENRISKKDSGKNQLQSHSSISKSQNQPQETKTVFITSTSASVPKPAVLTEQHVQSIDSRTVAMGSNQFRNSGNSSFSANYHSAVNHFRDKPISIERYHPSIVDTNNIDEKTFYPRKPLASANNFFPSLENANHMHAGFPNRGSYQQKQFCRHFARGRCHFGDNCKFLHG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3869 444 MobiDBLite consensus disorder prediction 286 305 - -
Psa4g3869 444 ProSiteProfiles SAP motif profile. 92 126 IPR003034 -
Psa4g3869 444 Coils Coil 230 250 - -
Psa4g3869 444 ProSiteProfiles Zinc finger C3H1-type profile. 419 444 IPR000571 GO:0046872
Psa4g3869 444 SUPERFAMILY SAP domain 81 126 IPR036361 -
Psa4g3869 444 Gene3D - 414 444 - -
Psa4g3869 444 MobiDBLite consensus disorder prediction 271 305 - -
Psa4g3869 444 MobiDBLite consensus disorder prediction 1 33 - -
Psa4g3869 444 SMART sap_9 92 126 IPR003034 -
Psa4g3869 444 Pfam SAP domain 92 125 IPR003034 -
Psa4g3869 444 MobiDBLite consensus disorder prediction 271 285 - -
Psa4g3869 444 Coils Coil 256 276 - -
Psa4g3869 444 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 13 443 IPR045124 GO:0003723|GO:0045892
Psa4g3869 444 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 13 443 - -
Psa4g3869 444 Pfam CCCH-type zinc finger 425 444 IPR041367 -
Psa4g3869 444 Gene3D SAP domain 74 138 IPR036361 -
Psa4g3869 444 SUPERFAMILY CCCH zinc finger 421 444 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3869 Psa-Chr4 323505722 323508943 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g3869 SAP 7.9e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3869 - - gmx:100815642 515.383