Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3853 ATGTGCGGTGGTGCTATTATCTCCGACTTCATCCCTGCTACGGCGGCCGTAGGTGGTTCCCGCCGTGTTACTGCTGATATCCTGTGGCCGAATTTGAGGAAAAACGGTTTGAAGAAACCGTTTTTGCTTGACGATGATTTCGAGGCTGGGTTCAGAGAGTTCAAGGATGATTCTGATTTTGATGAGGATGAGGATGAGGAGGAAGATGAAGGGTTGATGCTCGGTGTGAAAGGCTTTTCTTTCTCTTCCGGCAACAACAAGTCTTCAAGGACCTTCTCTCGTGGATCGGGTGCTGCAAAGCCTGTGGTGTCGAAATCGAATGAGCAACCTGAAAAGGATTCGAAGAGGAAGAGGAAGAATCAGTATAGGGGTATCCGACAACGTCCGTGGGGGAAATGGGCAGCTGAGATTCGTGACCCGAGGAAAGGAGTTCGTGTTTGGCTTGGAACGTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGAATCCGTGGCTCGAAAGCCAAGGTGAATTTCCCTGAGGAGACTCCAAATGCTTCTGCAAAACGTGTTAAGCCGAGTCCTGAGGCGCAGCTGGTGAACAAGAATCTGAACTCGTTCAAACCGAATGGGAATGCGATGTTCAACTTCGGTGAGAATATGGAGACCTACTATTCCCCTATGGATCAGGTTGAACAGAAGCCGATGGTTAACAACCAGTTTGCGAACATGGGAGTGTTTGCGGGAAATGGATTTCAGCTTGCAGCTGCTGATGTTAATGCTTACTTCAGCTCAGAGCATTCGAGCAACTCGTTTGATTATTCTGATCTAGGTTGGGGCGAACAAGCCCCGAAAACCCCTGAGATTTCGTCTGTGTTTTCCGCTCCTGCTCCTCGGGAAGGCGAATCTCAGATCAATCTGCAATCTGCCAATGCTCAGGATATGCTGCCTATGCAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTTGCTGATATCGAGTCCCAGCTGAAGTTCTTCGAGAACTCGTTTGATGATAACTGGAGTGATGCTTCCTTGGCGTCTTTGCTCGGTACTGATTCAGTTCAGGATGGTGGAAACACAATGAGCCTCTGGAGCTTTGATGACATGCCCGCCATCTCCGGCGGAGTTTTCTGA 1152 0.4905 MCGGAIISDFIPATAAVGGSRRVTADILWPNLRKNGLKKPFLLDDDFEAGFREFKDDSDFDEDEDEEEDEGLMLGVKGFSFSSGNNKSSRTFSRGSGAAKPVVSKSNEQPEKDSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGSKAKVNFPEETPNASAKRVKPSPEAQLVNKNLNSFKPNGNAMFNFGENMETYYSPMDQVEQKPMVNNQFANMGVFAGNGFQLAAADVNAYFSSEHSSNSFDYSDLGWGEQAPKTPEISSVFSAPAPREGESQINLQSANAQDMLPMQDDSAKTLSEELADIESQLKFFENSFDDNWSDASLASLLGTDSVQDGGNTMSLWSFDDMPAISGGVF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3853 383 ProSiteProfiles AGC-kinase C-terminal domain profile. 25 91 IPR000961 GO:0004674|GO:0005524|GO:0006468
Psa4g3853 383 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Psa4g3853 383 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Psa4g3853 383 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Psa4g3853 383 PANTHER EREBP TRANSCRIPTION FACTOR 1 377 - -
Psa4g3853 383 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Psa4g3853 383 MobiDBLite consensus disorder prediction 87 103 - -
Psa4g3853 383 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Psa4g3853 383 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Psa4g3853 383 MobiDBLite consensus disorder prediction 87 125 - -
Psa4g3853 383 PANTHER DNA-BINDING DOMAIN 1 377 IPR044808 GO:0003700|GO:0009873
Psa4g3853 383 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Psa4g3853 383 Coils Coil 321 341 - -
Psa4g3853 383 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3853 Psa-Chr4 322141951 322145312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3853 1 383 AP2-EREBP Transcription Factor Family AT3G14230 42.439 3.38e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa4g3853 AP2 8.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3853 K09286 - gmx:100818646 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3853 4 322141951 322145312 Psa4g3853 4 322141951 322145312 ECH