Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g3848 | ATGGATTCTCAAGATAAAGTTAGAAAGACAAATGATCAGCCTGAAGTCTCCTTGATGGCTGGTGAAAGAGCGAAATCGCTTAATCAAGCTTTTCTCAGTATCTGCGAGTCTCTTATCGCAGGTGAAGTCGTCGATGGAGTATCCATGAGAATTGGGAACTTCATTTCATGCATTCTATCTACTAGTAAACACTTCTTGAAGAAAAATATTTCTGAGATCATTGAGGAAAATTCATCCTCTACGATAGATGAAGACATGTTTTATGATGCTGAAGAAATTTTTTCAATAAATGATGACAAACATGTCGTAGAAATCCAAGTAGTGGATAGTGAAGATAACACACTCTTGAGAAACCTCAAACAAAAACAAAAGGAGACTATTGAACATAAGTATTCTACTCAATTGAAACAATCATATTGTTCTATTTGTATGGAAGCTAAACCAATTAAAAACATGTTCAAAAATCAAAACTGTTCACACTCTTTCTGTGAGGATTGTATTGCAAGATATCTAGCTGCAAAAATTCAAGAGAATATATCAAGGGTAAACTGTCCTGAACCAAGCTGCAAAGGAACTTTAGAGGCTTATCAGTGTACTTCAATTATACCAAAGGATGTGTTTGATAAATGGGAAAATGCACTTTGTGAGAATTCGGTATTAGAATCACAAAAATTTTATTGCCCTTTTAAGGATTGTTCAGCTATGTTGGTGAACGATGCAAAGGAAGTTGTAACAGCTTCAGAATGTCCACATTGTCATCGATTGTTTTGCGCACAATGTAGGGTTTCTTGGCATGCAGGAGTTGATTGTAGAGAGTTTCAAAGTTTGAAAAACAGTGAGCAAGGGAAGGAAGATTTATTGACGATGAAACTTGCAAAGAAAAAGAATTGGAAAAGATGTCCACAATGCAATTACTATGTGGAAAAAGTTCATGGATGTACTCACATTATATGCAGGTGTCGTCATCAATTTTGCTATGGATGTGGAGGCACTTGGACAGGAGGGTCCCACTATAAATGTAAAGCTCGAAAAAAAATTGCACTATGCCCTTTTTTGACTTGA | 1062 | 0.3588 | MDSQDKVRKTNDQPEVSLMAGERAKSLNQAFLSICESLIAGEVVDGVSMRIGNFISCILSTSKHFLKKNISEIIEENSSSTIDEDMFYDAEEIFSINDDKHVVEIQVVDSEDNTLLRNLKQKQKETIEHKYSTQLKQSYCSICMEAKPIKNMFKNQNCSHSFCEDCIARYLAAKIQENISRVNCPEPSCKGTLEAYQCTSIIPKDVFDKWENALCENSVLESQKFYCPFKDCSAMLVNDAKEVVTASECPHCHRLFCAQCRVSWHAGVDCREFQSLKNSEQGKEDLLTMKLAKKKNWKRCPQCNYYVEKVHGCTHIICRCRHQFCYGCGGTWTGGSHYKCKARKKIALCPFLT* | 354 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g3848 | 353 | ProSiteProfiles | TRIAD supradomain profile. | 136 | 344 | IPR044066 | - | |
| Psa4g3848 | 353 | SMART | ibrneu5 | 284 | 340 | IPR002867 | - | |
| Psa4g3848 | 353 | SMART | ibrneu5 | 208 | 270 | IPR002867 | - | |
| Psa4g3848 | 353 | Pfam | Zinc finger, C3HC4 type (RING finger) | 139 | 174 | - | - | |
| Psa4g3848 | 353 | Pfam | IBR domain, a half RING-finger domain | 209 | 270 | IPR002867 | - | |
| Psa4g3848 | 353 | Pfam | IBR domain, a half RING-finger domain | 288 | 339 | IPR002867 | - | |
| Psa4g3848 | 353 | ProSitePatterns | Zinc finger RING-type signature. | 158 | 167 | IPR017907 | - | |
| Psa4g3848 | 353 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 62 | 338 | IPR031127 | GO:0004842|GO:0016567 | |
| Psa4g3848 | 353 | SUPERFAMILY | RING/U-box | 283 | 343 | - | - | |
| Psa4g3848 | 353 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 62 | 338 | - | - | |
| Psa4g3848 | 353 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 185 | IPR001841 | - | |
| Psa4g3848 | 353 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 222 | IPR013083 | - | |
| Psa4g3848 | 353 | SUPERFAMILY | RING/U-box | 137 | 217 | - | - | |
| Psa4g3848 | 353 | SMART | ring_2 | 300 | 352 | IPR001841 | - | |
| Psa4g3848 | 353 | SMART | ring_2 | 140 | 189 | IPR001841 | - | |
| Psa4g3848 | 353 | Gene3D | - | 267 | 347 | - | - | |
| Psa4g3848 | 353 | SUPERFAMILY | RING/U-box | 220 | 274 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g3848 | Psa-Chr4 | 321696920 | 321704617 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g3848 | 140 | 330 | C3H Transcription Factor Family | AT2G19610 | 28.293 | 5.22e-20 | 88.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g3848 | K11975 | - | gmx:100815626 | 346.665 |